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Genomes and Genes | Isabelle CallebautSummaryCountry: France Publications
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Publications
Cernunnos interacts with the XRCC4 x DNA-ligase IV complex and is homologous to the yeast nonhomologous end-joining factor Nej1Isabelle Callebaut
Département de Biologie Structurale, Institut de Minéralogie et de Physique des Milieux Condensés, CNRS UMR7590, Universités Paris 6 et Paris 7, Paris, F 75005 France
J Biol Chem 281:13857-60. 2006..Altogether these results shed new lights on the last step, the DNA religation, of the NHEJ pathway...
Calcineurin B-like domains in the large regulatory alpha/beta subunits of phosphorylase kinaseCathelène Carrière
Département de Biologie Structurale, Institut de Minéralogie et de Physique des Milieux Condensés, UMR 7590, CNRS, Universités Paris 6 et Paris 7, Paris, France
Proteins 71:1597-606. 2008..This finding, together the identification of significant similarities of domain D with the preceding domain C, may help to understand the molecular mechanism by which PhK alpha and/or beta domain D might regulate PhK activity...
Isolated ZP-N domains constitute the N-terminal extensions of Zona Pellucida proteinsIsabelle Callebaut
Département de Biologie Structurale, IMPMC UMR 7590, Universités Pierre et Marie Curie Paris6, Paris, France
Bioinformatics 23:1871-4. 2007....
Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: conserved features and differences relative to other eukaryotesIsabelle Callebaut
Centre National de la Recherche Scientifique CNRS UMR7590, Universités Paris 6 et Paris 7, Département de Biologie Structurale, IMPMC, 75252 Paris Cedex 05, France
BMC Genomics 6:100. 2005..In this study, we have used a combination of sensitive sequence analysis methods to predict the existence of several parasite encoded general transcription factors associated with RNA polymerase II...
OCRE: a novel domain made of imperfect, aromatic-rich octamer repeatsIsabelle Callebaut
Département de Biologie Structurale, LMCP, CNRS UMR7590, Universités Paris 6 and Paris 7, case 115, 4 place Jussieu, 75252 Paris Cedex 05, France Isabelle
Bioinformatics 21:699-702. 2005....
Sequence-based modeling of Abeta42 soluble oligomersFabienne Dulin
Département de Biologie Structurale, IMPMC, CNRS UMR7590, Universités Pierre et Marie Curie Paris 6 et Denis Diderot Paris 7, F 75005 France
Biopolymers 85:422-37. 2007..The consistency of these models is discussed with respect to available experimental and theoretical data...
Molecular models of the open and closed states of the whole human CFTR proteinJean Paul Mornon
IMPMC, UMR7590, CNRS, Universités Pierre et Marie Curie Paris 6 et Denis Diderot Paris 7, 140 rue de Lourmel, Paris, France
Cell Mol Life Sci 66:3469-86. 2009....
Metallo-beta-lactamase fold within nucleic acids processing enzymes: the beta-CASP familyIsabelle Callebaut
Systèmes moléculaires et Biologie structurale, LMCP, CNRS UMR 7590, Universités Paris 6 et Paris 7, case 115, 4 place Jussieu, F 75252 Paris Cedex 05, France
Nucleic Acids Res 30:3592-601. 2002....
An EVH1/WH1 domain as a key actor in TGFbeta signallingIsabelle Callebaut
Systèmes moléculaires and Biologie structurale, LMCP, CNRS UMR 7590, Universités Paris 6 and Paris 7, case 115, 4 place Jussieu, Paris, France
FEBS Lett 519:178-80. 2002..This finding highlights the pivotal role that the EVH1/WH1 family of domains play in multiple eukaryotic signal transduction pathways...
A generalized analysis of hydrophobic and loop clusters within globular protein sequencesRichard Eudes
Structural Biology Department, IMPMC, CNRS UMR7590, Universités Paris 6 and Paris 7, case 115, 4 place Jussieu, 75252 Paris Cedex 05, France
BMC Struct Biol 7:2. 2007..These species are characterized only by their hydrophobic/non-hydrophobic dichotomy. This analysis has been extended to loop-forming clusters, using an appropriate loop alphabet...
EMI domains are widespread and reveal the probable orthologs of the Caenorhabditis elegans CED-1 proteinIsabelle Callebaut
Systèmes moléculaires et Biologie structurale, LMCP, CNRS UMR7590, Universités Paris 6 et Paris 7, case 115, 4 place Jussieu, 75252 05 Paris Cedex, France
Biochem Biophys Res Commun 300:619-23. 2003..Sequence profiles specific of the EMI family of domains led to identify the probable orthologs of the C. elegans CED-1 protein in mammals and insects, which were yet uncovered...
Ubiquitination-induced conformational change within the deiodinase dimer is a switch regulating enzyme activityG D Vivek Sagar
Division of Endocrinology, Diabetes and Hypertension, Brigham and Women s Hospital, Harvard Medical School, Boston, MA 02115, USA
Mol Cell Biol 27:4774-83. 2007..The continuous association of D2 with this regulatory protein complex supports rapid cycles of deiodination, conjugation to ubiquitin, and enzyme reactivation by deubiquitination, allowing tight control of thyroid hormone action...
The yeast Sar exchange factor Sec12, and its higher organism orthologs, fold as beta-propellersPierre Chardin
FEBS Lett 525:171-3. 2002
Identification, characterization and metagenome analysis of oocyte-specific genes organized in clusters in the mouse genomeAmélie Paillisson
Physiologie de la Reproduction et des Comportements, UMR 6175 INRA CNRS Université François Rabelais de Tours Haras Nationaux, 37380 Nouzilly, France
BMC Genomics 6:76. 2005..In an attempt to identify novel oocyte-specific genes in the mouse, we have used an in silico subtraction methodology, and we have focused our attention on genes that are organized in genomic clusters...
Identification of the hydrophobic strand in the A-B loop of leptin as major binding site III: implications for large-scale preparation of potent recombinant human and ovine leptin antagonistsLeonora Niv-Spector
Faculty of Agricultural, Food and Environmental Quality Sciences, The Hebrew University, Rehovot 76100, Israel
Biochem J 391:221-30. 2005....
The Hedgehog-inducible ubiquitin ligase subunit WSB-1 modulates thyroid hormone activation and PTHrP secretion in the developing growth plateMonica Dentice
Thyroid Section, Division of Endocrinology, Diabetes and Hypertension, Brigham and Women s Hospital and Harvard Medical School, Boston, MA 02115, USA
Nat Cell Biol 7:698-705. 2005..Thus, ECS(WSB-1) mediates a mechanism by which 'systemic' thyroid hormone can effect local control of the Hedgehog-PTHrP negative feedback loop and thus skeletogenesis...
Multiple pathways inhibit NHEJ at telomeresStéphane Marcand
Centre National de la Recherche Scientifque UMR 217, Institut de Radiobiologie Cellulaire et Moleculaire, CEA Fontenay, 92265 Fontenay aux Roses Cedex, France
Genes Dev 22:1153-8. 2008..We discuss a possible mechanism that would explain Rif2 multifunctionality at telomeres and the recent evolutionary origin of Rif2 from an origin recognition complex (ORC) subunit...
ATP hydrolysis is essential for the function of the Uup ATP-binding cassette ATPase in precise excision of transposonsDorothee Murat
Unité des Membranes Bactériennes CNRS URA2172, Département de Microbiologie Fondamentale et Médicale, Site Fernbach, Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris Cedex 15, France
J Biol Chem 281:6850-9. 2006..Analysis of Walker motif B mutants suggests that ATP hydrolysis at the two ABC domains is strictly coordinated and is essential for the function of Uup in vivo...
The thyroid hormone-inactivating deiodinase functions as a homodimerG D Vivek Sagar
Brigham and Women s Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA
Mol Endocrinol 22:1382-93. 2008..In conclusion, the inactivating deiodinase D3 exists as homo- or heterodimer in living intact cells, a feature that is critical for their catalytic activities...
The glycine residues G551 and G1349 within the ATP-binding cassette signature motifs play critical roles in the activation and inhibition of cystic fibrosis transmembrane conductance regulator channels by phloxine BPatricia Melin
Institut de Physiologie et Biologie Cellulaires, CNRS UMR6187, Universite de Poitiers, 40 Avenue du Recteur Pineau, 86022, Poitiers, France
J Membr Biol 208:203-12. 2005..These data show that G551 and G1349 control the inhibition and activation of CFTR by these agents, suggesting functional nonequivalence of the signature motifs of NBD in the ABC transporter CFTR...
Structural and functional characterization of the TgDRE multidomain protein, a DNA repair enzyme from Toxoplasma gondiiKarine Frénal
Unité de Résonance Magnétique Nucléaire des Biomolécules, CNRS URA 2185, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France
Biochemistry 45:4867-74. 2006..The presence of both RNA- and protein-binding domains seems to indicate that TgDRE could also be involved in RNA metabolism...
The discovery of SycO highlights a new function for type III secretion effector chaperonesMichel Letzelter
, Basel, Switzerland
EMBO J 25:3223-33. 2006..We propose that covering an MLD might be an essential function of T3S effector chaperones...
Atypical structure and phylogenomic evolution of the new eutherian oocyte- and embryo-expressed KHDC1/DPPA5/ECAT1/OOEP gene familyAlice Pierre
Physiologie de la Reproduction et des Comportements, UMR 6175 INRA CNRS Université F Rabelais de Tours Haras Nationaux, 37380 Nouzilly, France
Genomics 90:583-94. 2007....
The checkpoint Saccharomyces cerevisiae Rad9 protein contains a tandem tudor domain that recognizes DNANathalie Lancelot
Institut de Biologie et Technologies de Saclay, CEA Saclay, 91191 Gif sur Yvette, France
Nucleic Acids Res 35:5898-912. 2007..However, their modes of chromatin recognition are different, suggesting that the corresponding interactions are differently regulated...
Human mismatch repair protein MSH6 contains a PWWP domain that targets double stranded DNACedric Laguri
CEA Laboratoire de Biologie Structurale et Radiobiologie, iBiTec Saclay, 91191 Gif sur Yvette, France
Biochemistry 47:6199-207. 2008..However, it only moderately affects domain stability, and it does not perturb DNA binding in vitro...
In silico identification and structural features of six new genes similar to MATER specifically expressed in the oocyteSébastien Dadé
Physiologie de la Reproduction et des Comportements, UMR 6175 INRA CNRS Université François Rabelais de Tours Haras Nationaux, 37380 Nouzilly, France
Biochem Biophys Res Commun 324:547-53. 2004..These experiments confirmed their oocyte restricted expression. Five of these genes are localized on mouse chromosome 7, as is NALP5/MATER; among them, three are localized in a 300 kb cluster...
Integrin receptor specificity for human red cell ICAM-4 ligand. Critical residues for alphaIIbeta3 bindingPatricia Hermand
INSERM U76, Institut National de la Transfusion Sanguine, Paris, France
Eur J Biochem 271:3729-40. 2004....
An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the orthologue of mammalian CGRP-RCPMagali Siaut
Service de Biochimie et de Génétique Moléculaire, CEA Saclay, F 91191 Gif sur Yvette Cedex, France
Mol Cell Biol 23:195-205. 2003..These RNA polymerase subunits appear to have evolved to meet the distinct requirements of the multiple forms of RNA polymerases...
Non-intertwined binary patterns of hydrophobic/nonhydrophobic amino acids are considerably better markers of regular secondary structures than nonconstrained patternsJérôme Hennetin
Systèmes moléculaires and Biologie structurale, LMCP, CNRS UMR 7590, Universités Paris 6 and Paris 7, case 115, 4 place Jussieu, 75252 Paris Cedex 05, France
Proteins 51:236-44. 2003....
D53 is a novel endosomal SNARE-binding protein that enhances interaction of syntaxin 1 with the synaptobrevin 2 complex in vitroVeronique Proux-Gillardeaux
Régulations Cellulaires et Oncogénèse, UMR 146 du CNRS, Institut Curie, Centre Universitaire, 91405 Orsay Cedex, France
Biochem J 370:213-21. 2003..Furthermore, D53 forms Sb2/Stx1/D53 complexes in vitro in a manner similar to SNAP-25. We propose that D53 could be involved in the assembly or disassembly of endosomal SNARE complexes by regulating Sb2/Stx interaction...
Identification and characterization of Moca-cyp. A Drosophila melanogaster nuclear cyclophilinLaurent Cavarec
Laboratoire de génétique oncologique, UMR1599, Institut Gustave Roussy PR1, 39 rue Camille Desmoulins, Villejuif 94805 cedex, France
J Biol Chem 277:41171-82. 2002..The moca domain is located within the C-terminal tail and is the exclusive hallmark of a group of large cyclophilins found in multicellular organisms of the animal kingdom...
A novel DNA repair enzyme containing RNA recognition, G-patch and specific splicing factor 45-like motifs in the protozoan parasite Toxoplasma gondiiNajoua Dendouga
, Laboratoire de Chimie Biologique, CNRS UMR 8576, , France
Eur J Biochem 269:3393-401. 2002..The presence of these motifs suggests that T. gondii TgDRE might also be involved in other biological functions such as RNA metabolism in addition to DNA-repair...
The iodothyronine selenodeiodinases are thioredoxin-fold family proteins containing a glycoside hydrolase clan GH-A-like structureIsabelle Callebaut
Poôle Bio, Laboratoive de Minéralogie Cristallographie de Paris, CNRS UMR7590, Universities Paris 6 and Paris 7, Paris 75252 Cedex 05, France
J Biol Chem 278:36887-96. 2003..This model can explain a number of results from previous mutagenesis analyses and permits new verifiable insights into the structural and functional properties of these enzymes...
The multifunctional protein PEA-15 is involved in the control of apoptosis and cell cycle in astrocytesFrançois Renault
INSERM U114, College de France, 11 place Marcelin Berthelot, 75231 Paris Cedex 05, France
Biochem Pharmacol 66:1581-8. 2003..The three-dimensional structure of PEA-15 has been modelized and recently determined using NMR spectroscopy, and may help to understand the various functions played by the protein through its molecular interactions...
Viral fusion peptides and identification of membrane-interacting segmentsVictoria Dominguez Del Angel
, LMCP, CNRS UMR 7590, , case 115, 4 place Jussieu, Paris Cedex 05 FR-75252, France
Biochem Biophys Res Commun 293:1153-60. 2002....
Molecular basis of the spectral expression of CIAS1 mutations associated with phagocytic cell-mediated autoinflammatory disorders CINCA/NOMID, MWS, and FCUBenedicte Neven
INSERM U429, Hopital Necker Enfants Malades, Paris, France
Blood 103:2809-15. 2004....
Identification of a new expanding family of genes characterized by atypical LRR domains. Localization of a cluster preferentially expressed in oocyteSébastien Dadé
Physiologie de la Reproduction et des Comportements, UMR 6073 INRA CNRS Université François Rabelais de Tours, 37380, Nouzilly, France
FEBS Lett 555:533-8. 2003..We thus re-named this latter gene 'oogenesin-1', and the three genes identified here were named oogenesin-2, -3 and -4...
Striking conformational change suspected within the phosphoribulokinase dimer induced by interaction with GAPDHFabrice Mouche
, CNRS, UMR-7590, , case 115, 4 place Jussieu, 75252 Paris Cedex 05, France
J Biol Chem 277:6743-9. 2002....
The Tudor tandem of 53BP1: a new structural motif involved in DNA and RG-rich peptide bindingGaëlle Charier
Departement d Ingenierie et d Etudes des Proteines, 91191 Gif sur Yvette, France
Structure 12:1551-62. 2004....
The A14-A43 heterodimer subunit in yeast RNA pol I and their relationship to Rpb4-Rpb7 pol II subunitsGerald Peyroche
Laboratoire de Transcription des Gènes, Commissariat à l Energie Atomique Saclay, 91191 Gif sur Yvette Cedex, France
Proc Natl Acad Sci U S A 99:14670-5. 2002..This hypothesis, combined with our structural data, suggests a new localization of Rpb7-Rpb4 subunits in the three-dimensional structure of yeast pol II...
1H, 13C and 15N resonance assignments of the region 1463-1617 of the mouse p53 binding protein 1 (53BP1)Gaëlle Charier
J Biomol NMR 28:303-4. 2004
The metallo-beta-lactamase/beta-CASP domain of Artemis constitutes the catalytic core for V(D)J recombinationCatherine Poinsignon
Développement Normal et Pathologique de Système Immunitaire, INSERM U429, Hopital Necker Enfants Malades, 75015 Paris, France
J Exp Med 199:315-21. 2004....
Characterization of a Type III secretion substrate specificity switch (T3S4) domain in YscP from Yersinia enterocoliticaCéline Agrain
Biozentrum der Universitat Basel, Basel, Switzerland
Mol Microbiol 56:54-67. 2005....
The delta subunit of retinal rod cGMP phosphodiesterase regulates the membrane association of Ras and Rap GTPasesVanessa Nancy
Inserm U 528, Institut Curie Section de Recherche, 75005 Paris, France
J Biol Chem 277:15076-84. 2002....
P3 peptide, a truncated form of A beta devoid of synaptotoxic effect, does not assemble into soluble oligomersFabienne Dulin
CI NAPS, UMR 6232 UCBN CNRS, Centre Cyceron, Bd Henri Becquerel, 14074 Caen Cedex, France
FEBS Lett 582:1865-70. 2008..These properties may explain why p3 would be devoid of any impact on synaptic function and moreover, strengthen the hypothesis that A beta oligomers are the principal synaptotoxic forms of A beta peptides in Alzheimer disease...
Bovine leukemia virus SU protein interacts with zinc, and mutations within two interacting regions differently affect viral fusion and infectivity in vivoJean Stéphane Gatot
Unité de Biologie Cellulaire et Moléculaire, Faculté universitaire des Sciences agronomiques, Gembloux, Belgium
J Virol 76:7956-67. 2002....
GPR50 is the mammalian ortholog of Mel1c: evidence of rapid evolution in mammalsLaurence Dufourny
Physiologie de la Reproduction et des Comportements, UMR 6175 INRA CNRS Université François Rabelais de Tours Haras Nationaux, 37380 Nouzilly, France
BMC Evol Biol 8:105. 2008..The aim of this study was to describe the evolutionary relationships between GPR50 and the three other members of the melatonin receptor subfamily...
Preparation of leptin antagonists by site-directed mutagenesis of human, ovine, rat, and mouse leptin's site III: implications on blocking undesired leptin action in vivoGili Solomon
Faculty of Agricultural, Food, and Environmental Quality Sciences, The Hebrew University of Jerusalem, POB 12, Rehovot 76100, Israel
Ann N Y Acad Sci 1091:531-9. 2006..Some muteins were pegylated using 40 kDa PEG. Although pegylation decreased the in vitro activity, increasing circulation half-life can recompensate this deficit, so pegylated antagonists are expected to be more potent in vivo...
Severe and progressive encephalitis as a presenting manifestation of a novel missense perforin mutation and impaired cytolytic activityJerome Feldmann
Inistitut National de la Santé et de la Recherche Médicale INSERM U429, Hopital Necker Enfants Malades, 149 rue de Sevres, 75743 Paris, Cedex 15, France
Blood 105:2658-63. 2005..This observation also raises the question of the role of some mutations in the neurologic expression of FHL...
Molecular basis of methylmalonyl-CoA mutase apoenzyme defect in 40 European patients affected by mut(o) and mut- forms of methylmalonic acidemia: identification of 29 novel mutations in the MUT geneCecile Acquaviva
Fédération de Génétique, Assistance Publique Hopitaux de Paris, Hopital Robert Debre, Paris, France
Hum Mutat 25:167-76. 2005..shermanii enzyme. In this work we update the spectrum of MCM mutations (n=84), and then discuss their prevalence and distribution throughout the coding sequence in relation to the enzyme structure...
Characterization and study of a kappa-casein-like chymosin-sensitive linkageIsabelle Callebaut
, IMPMC, CNRS UMR7590, , case 115, 4 place Jussieu, 75252 Paris Cedex 05, France
Biochim Biophys Acta 1749:75-80. 2005..The effect of the enzyme activity of chymosin was thus tested on glutamine synthetase. Chymosin cut the latter at the Phe-Met linkage, suggesting that this system may locally resemble the kappa-casein/chymosin complex...
Up date on IGFBP-4: regulation of IGFBP-4 levels and functions, in vitro and in vivoSabine Mazerbourg
Station INRA de Physiologie de la Reproduction et des Comportements, CNRS UMR 6073, , 37380 Nouzilly, France
Growth Horm IGF Res 14:71-84. 2004..In this review, we have provided an update on IGFBP-4 research and we have summarized our current understanding of the regulation of levels and actions of IGFBP-4 and proteolytic fragments both in vitro and in vivo...
NEDD1-dependent recruitment of the gamma-tubulin ring complex to the centrosome is necessary for centriole duplication and spindle assemblyLaurence Haren
Institut de Sciences et Technologies du Medicament de Toulouse, Centre National de la Recherche Scientifique Pierre Fabre, 31400 Toulouse, France
J Cell Biol 172:505-15. 2006..Further, we show that depletion of NEDD1 inhibits centriole duplication, as does depletion of gamma-tubulin. Our data suggest that centriole duplication requires NEDD1-dependent recruitment of gamma-tubulin to the centrosome...
Munc13-4 is essential for cytolytic granules fusion and is mutated in a form of familial hemophagocytic lymphohistiocytosis (FHL3)Jerome Feldmann
INSERM U429, Hopital Necker Enfants Malades, 75743 Paris, France
Cell 115:461-73. 2003..Expressed tagged hMunc13-4 localizes with cytotoxic granules at the immunological synapse. HMunc13-4 is therefore essential for the priming step of cytolytic granules secretion preceding vesicle membrane fusion...
ACCA phosphopeptide recognition by the BRCT repeats of BRCA1Hind Ray
Laboratoire de Genetique Moleculaire, Signalisation et Cancer, CNRS UMR 5201, Faculte de Medecine Rockefeller, 8 avenue Rockefeller, 69373 Lyon Cedex 08, France
J Mol Biol 359:973-82. 2006..We finally demonstrated by immunoprecipitation of ACCA in cells, that the whole BRCA1 protein interacts with ACCA when phosphorylated on Ser1263...
A new rubisco-like protein coexists with a photosynthetic rubisco in the planktonic cyanobacteria MicrocystisAlyssa Carré-Mlouka
Departement de Microbiologie, Unité des Cyanobactéries CNRS URA 2172 and Plate forme Génomique Pasteur Génopole Ile de France, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France
J Biol Chem 281:24462-71. 2006..The discovery of the coexistence of RbcL(I) and RbcL(IV) in cyanobacteria, the ancestors of chloroplasts, enlightens episodes of the chaotic evolutionary history of the Rubiscos, a protein family of major importance for life on Earth...
The V(D)J recombination/DNA repair factor artemis belongs to the metallo-beta-lactamase family and constitutes a critical developmental checkpoint of the lymphoid systemDespina Moshous
, INSERM U429, , Paris, France
Ann N Y Acad Sci 987:150-7. 2003..Two of these patients developed aggressive B cell lymphomas, a condition that suggests Artemis may be considered a "caretaker" factor, similarly to the other V(D)J recombination/DNA repair actors...
Bromodomain testis-specific protein is expressed in mouse oocyte and evolves faster than its ubiquitously expressed paralogs BRD2, -3, and -4Amélie Paillisson
Physiologie de la Reproduction et des Comportements, UMR 6175 INRA CNRS Université François Rabelais de Tours Haras Nationaux, 37380 Nouzilly, France
Genomics 89:215-23. 2007..This suggests that there is a relationship between the evolution of these four groups of orthology and their tissue specificity of expression...
Phylogenetic analysis and identification of pseudogenes reveal a progressive loss of zona pellucida genes during evolution of vertebratesGhylene Goudet
Physiologie de la Reproduction et des Comportements, INRA CNRS Université de Tours Haras Nationaux, IFR 135, 37380 Nouzilly, France
Biol Reprod 78:796-806. 2008..Our review provides new directions to investigate the molecular basis of sperm-egg recognition, a mechanism which is not yet elucidated...
