Aurelie Bonin

Summary

Country: France

Publications

  1. doi The genetic architecture of a complex trait: Resistance to multiple toxins produced by Bacillus thuringiensis israelensis in the dengue and yellow fever vector, the mosquito Aedes aegypti
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, UMR CNRS 5553, Universite Joseph Fourier, BP53, 38041 Grenoble, France Electronic address
    Infect Genet Evol 35:204-13. 2015
  2. pmc Impaired liver function in Xenopus tropicalis exposed to benzo[a]pyrene: transcriptomic and metabolic evidence
    Christophe Regnault
    University Grenoble Alpes, LECA, F 38000 Grenoble, France
    BMC Genomics 15:666. 2014
  3. ncbi How to track and assess genotyping errors in population genetics studies
    A Bonin
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, BP 53, 38041 Grenoble Cedex 09, France
    Mol Ecol 13:3261-73. 2004
  4. ncbi Explorative genome scan to detect candidate loci for adaptation along a gradient of altitude in the common frog (Rana temporaria)
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, Grenoble, France
    Mol Biol Evol 23:773-83. 2006
  5. pmc Chemical and biological insecticides select distinct gene expression patterns in Aedes aegypti mosquito
    Laurence Despres
    Université Grenoble Alpes, Laboratoire d Ecologie Alpine UMR 5553, BP53, Grenoble 38041, France CNRS, Laboratoire d Ecologie Alpine UMR 5553, BP53, Grenoble 38041, France
    Biol Lett 10:20140716. 2014
  6. ncbi Use of amplified fragment length polymorphism (AFLP) markers in surveys of vertebrate diversity
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, Universite Joseph Fourier, F 38041 Grenoble Cedex 9, France
    Methods Enzymol 395:145-61. 2005
  7. ncbi Population adaptive index: a new method to help measure intraspecific genetic diversity and prioritize populations for conservation
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, BP 53, 38041 Grenoble Cedex 09, France
    Conserv Biol 21:697-708. 2007
  8. pmc Gene expression patterns and sequence polymorphisms associated with mosquito resistance to Bacillus thuringiensis israelensis toxins
    Laurence Despres
    Université Grenoble Alpes, Laboratoire d Ecologie Alpine UMR5553, Grenoble, France
    BMC Genomics 15:926. 2014
  9. pmc Candidate genes revealed by a genome scan for mosquito resistance to a bacterial insecticide: sequence and gene expression variations
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, BP 53, 38041 Grenoble Cedex 09, France
    BMC Genomics 10:551. 2009
  10. pmc A MITE-based genotyping method to reveal hundreds of DNA polymorphisms in an animal genome after a few generations of artificial selection
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, BP 53, 38041 Grenoble Cedex 09, France
    BMC Genomics 9:459. 2008

Detail Information

Publications17

  1. doi The genetic architecture of a complex trait: Resistance to multiple toxins produced by Bacillus thuringiensis israelensis in the dengue and yellow fever vector, the mosquito Aedes aegypti
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, UMR CNRS 5553, Universite Joseph Fourier, BP53, 38041 Grenoble, France Electronic address
    Infect Genet Evol 35:204-13. 2015
    ..9cM. It brought to light several assembly discrepancies with the reference genome, suggesting a high level of genome plasticity in Ae. aegypti. ..
  2. pmc Impaired liver function in Xenopus tropicalis exposed to benzo[a]pyrene: transcriptomic and metabolic evidence
    Christophe Regnault
    University Grenoble Alpes, LECA, F 38000 Grenoble, France
    BMC Genomics 15:666. 2014
    ....
  3. ncbi How to track and assess genotyping errors in population genetics studies
    A Bonin
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, BP 53, 38041 Grenoble Cedex 09, France
    Mol Ecol 13:3261-73. 2004
    ....
  4. ncbi Explorative genome scan to detect candidate loci for adaptation along a gradient of altitude in the common frog (Rana temporaria)
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, Grenoble, France
    Mol Biol Evol 23:773-83. 2006
    ..Finally, we provided some preliminary insights into the genetic basis of adaptation along an altitudinal cline in the common frog...
  5. pmc Chemical and biological insecticides select distinct gene expression patterns in Aedes aegypti mosquito
    Laurence Despres
    Université Grenoble Alpes, Laboratoire d Ecologie Alpine UMR 5553, BP53, Grenoble 38041, France CNRS, Laboratoire d Ecologie Alpine UMR 5553, BP53, Grenoble 38041, France
    Biol Lett 10:20140716. 2014
    ....
  6. ncbi Use of amplified fragment length polymorphism (AFLP) markers in surveys of vertebrate diversity
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, Universite Joseph Fourier, F 38041 Grenoble Cedex 9, France
    Methods Enzymol 395:145-61. 2005
    ..Finally, this chapter proposes a troubleshooting guide to help resolve the main technical difficulties encountered during the AFLP procedure...
  7. ncbi Population adaptive index: a new method to help measure intraspecific genetic diversity and prioritize populations for conservation
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, BP 53, 38041 Grenoble Cedex 09, France
    Conserv Biol 21:697-708. 2007
    ..Fourth, when neutral and adaptive results conflict, additional arguments (e.g., demography, ecology, and geographic proximity) should be considered together with levels of genetic diversity to determine a conservation strategy...
  8. pmc Gene expression patterns and sequence polymorphisms associated with mosquito resistance to Bacillus thuringiensis israelensis toxins
    Laurence Despres
    Université Grenoble Alpes, Laboratoire d Ecologie Alpine UMR5553, Grenoble, France
    BMC Genomics 15:926. 2014
    ..As the resistant strain displayed two marked larval development phenotypes (slow and normal), each phenotype was analyzed separately in order to evidence potential links between resistance mechanisms and mosquito life-history traits...
  9. pmc Candidate genes revealed by a genome scan for mosquito resistance to a bacterial insecticide: sequence and gene expression variations
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, BP 53, 38041 Grenoble Cedex 09, France
    BMC Genomics 10:551. 2009
    ..israelensis (Bti) insecticidal toxins...
  10. pmc A MITE-based genotyping method to reveal hundreds of DNA polymorphisms in an animal genome after a few generations of artificial selection
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, BP 53, 38041 Grenoble Cedex 09, France
    BMC Genomics 9:459. 2008
    ....
  11. doi Genome scan in the mosquito Aedes rusticus: population structure and detection of positive selection after insecticide treatment
    Margot Paris
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, BP 53, 38041 Grenoble Cedex 09, France
    Mol Ecol 19:325-37. 2010
    ..Furthermore, this signal was detectable using genomic tools before any toxicological evidence for resistance could be identified...
  12. doi Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field
    Stephanie Manel
    Laboratoire Population Environnement Développement, UMR 151 UP IRD, Universite de Provence, 13331 Marseille Cedex 03, France
    Mol Ecol 19:3760-72. 2010
    ..Then, we describe available statistical approaches for integrating spatial dependence into landscape analyses of adaptive genetic variation...
  13. doi obitools: a unix-inspired software package for DNA metabarcoding
    Frederic Boyer
    Laboratoire d Ecologie Alpine LECA, CNRS UMR 5553, Université Joseph Fourrier, BP 53, 38041, Grenoble Cedex 9, France
    Mol Ecol Resour 16:176-82. 2016
    ..The obitools package is distributed as an open source software available on the following website: http://metabarcoding.org/obitools. A Galaxy wrapper is available on the GenOuest core facility toolshed: http://toolshed.genouest.org. ..
  14. ncbi Genotyping errors: causes, consequences and solutions
    François Pompanon
    Laboratoire d Ecologie Alpine, UMR CNRS 5553, Universite Joseph Fourier, B P 53, 38041 Grenoble Cedex 9, France
    Nat Rev Genet 6:847-59. 2005
    ..We propose a protocol for estimating error rates and recommend that these measures be systemically reported to attest the reliability of published genotyping studies...
  15. doi Population genetics reveals origin and number of founders in a biological invasion
    Gentile Francesco Ficetola
    Laboratoire d Ecologie Alpine, UMR CNRS 5553, Universite de Savoie, 73376 Le Bourget du Lac cedex, France
    Mol Ecol 17:773-82. 2008
    ..This capability of invasion from a very small number of propagules challenges usual management strategies; species with such ability should be identified at an early stage of introduction...
  16. doi Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data
    Gentile F Ficetola
    Laboratoire d Ecologie Alpine LECA, Université Grenoble Alpes Savoie, F 38000, Grenoble, France
    Mol Ecol Resour 15:543-56. 2015
    ..The optimal level of replication for accurate species detection strongly varies among studies and could be explicitly estimated to improve the reliability of results. ..
  17. pmc Comparative analysis of response to selection with three insecticides in the dengue mosquito Aedes aegypti using mRNA sequencing
    Jean Philippe David
    Laboratoire d Ecologie Alpine LECA, UMR CNRS 5553, Grenoble, France
    BMC Genomics 15:174. 2014
    ....