Valerie Barbe

Summary

Country: France

Publications

  1. pmc Reductive evolution in Streptococcus agalactiae and the emergence of a host adapted lineage
    Isabelle Rosinski-Chupin
    Unité de Biologie des Bactéries Pathogènes à Gram Positif, 28 rue du Docteur Roux, Paris Cedex 15, France
    BMC Genomics 14:252. 2013
  2. pmc Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels
    Isabelle Pieretti
    CIRAD, UMR BGPI, F 34398 Montpellier cedex 5, France
    BMC Genomics 13:658. 2012
  3. pmc Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes
    Laura Gomez-Valero
    Institut Pasteur, Biologie des Bactéries Intracellulaires, 75724, Paris, France
    BMC Genomics 12:536. 2011
  4. pmc Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective
    Francois Thiaucourt
    CIRAD, UMR CMAEE, F 34398 Montpellier, France
    BMC Genomics 12:114. 2011
  5. pmc The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae
    Isabelle Pieretti
    CIRAD, UMR 385 BGPI, Campus International de Baillarguet, Montpellier, France
    BMC Genomics 10:616. 2009
  6. pmc Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence
    Benoît Remenant
    INRA CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F 97410, La Reunion, France
    BMC Genomics 11:379. 2010
  7. pmc Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity
    Laurent X Nouvel
    Universite de Toulouse, ENVT, UMR 1225 Interactions Hôtes Agents Pathogènes, 31076 Toulouse, France
    BMC Genomics 11:86. 2010
  8. pmc Sensing and adhesion are adaptive functions in the plant pathogenic xanthomonads
    Nadia Mhedbi-Hajri
    UMR077 PAVE, INRA, 42, rue Georges Morel, F 49071 Beaucouze, France
    BMC Evol Biol 11:67. 2011
  9. pmc Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium
    Valerie Barbe
    Genoscope and CNRS UMR8030, 2 rue Gaston Cremieux, 91057 Evry, Cedex, France
    Nucleic Acids Res 32:5766-79. 2004
  10. pmc Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites
    Valerie Barbe
    CEA, DSV, IG, Genoscope, 2 rue Gaston Cremieux, CP5706, F 91057 Evry Cedex, France
    J Bacteriol 193:5055-6. 2011

Collaborators

Detail Information

Publications18

  1. pmc Reductive evolution in Streptococcus agalactiae and the emergence of a host adapted lineage
    Isabelle Rosinski-Chupin
    Unité de Biologie des Bactéries Pathogènes à Gram Positif, 28 rue du Docteur Roux, Paris Cedex 15, France
    BMC Genomics 14:252. 2013
    ..To decipher the genetic basis for the emergence of these highly virulent GBS strains and of their adaptation to fish, we have analyzed the genomic sequence of seven strains isolated from fish and other poikilotherms...
  2. pmc Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels
    Isabelle Pieretti
    CIRAD, UMR BGPI, F 34398 Montpellier cedex 5, France
    BMC Genomics 13:658. 2012
    ..albilineans, and to compare, using suppression subtractive hybridization (SSH), genomic features of two strains differing in pathogenicity...
  3. pmc Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes
    Laura Gomez-Valero
    Institut Pasteur, Biologie des Bactéries Intracellulaires, 75724, Paris, France
    BMC Genomics 12:536. 2011
    ....
  4. pmc Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective
    Francois Thiaucourt
    CIRAD, UMR CMAEE, F 34398 Montpellier, France
    BMC Genomics 12:114. 2011
    ..We also compared the 95010 genome with the recently published genome of another Mmc strain (GM12) to evaluate Mmc strain diversity...
  5. pmc The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae
    Isabelle Pieretti
    CIRAD, UMR 385 BGPI, Campus International de Baillarguet, Montpellier, France
    BMC Genomics 10:616. 2009
    ..X. fastidiosa was excluded from the Xanthomonas group based on phylogenetic analyses with rRNA sequences...
  6. pmc Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence
    Benoît Remenant
    INRA CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F 97410, La Reunion, France
    BMC Genomics 11:379. 2010
    ....
  7. pmc Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity
    Laurent X Nouvel
    Universite de Toulouse, ENVT, UMR 1225 Interactions Hôtes Agents Pathogènes, 31076 Toulouse, France
    BMC Genomics 11:86. 2010
    ....
  8. pmc Sensing and adhesion are adaptive functions in the plant pathogenic xanthomonads
    Nadia Mhedbi-Hajri
    UMR077 PAVE, INRA, 42, rue Georges Morel, F 49071 Beaucouze, France
    BMC Evol Biol 11:67. 2011
    ..We hypothesised that determinants responsible for bacterial host adaptation are expressed starting from the establishment of chemotactic attraction and adhesion on host tissue...
  9. pmc Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium
    Valerie Barbe
    Genoscope and CNRS UMR8030, 2 rue Gaston Cremieux, 91057 Evry, Cedex, France
    Nucleic Acids Res 32:5766-79. 2004
    ..This finding supports the view that the cycle itself is centrally geared to the catabolic capabilities of this exceptionally versatile organism...
  10. pmc Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites
    Valerie Barbe
    CEA, DSV, IG, Genoscope, 2 rue Gaston Cremieux, CP5706, F 91057 Evry Cedex, France
    J Bacteriol 193:5055-6. 2011
    ..The genome consists of two linear replicons. The genes involved in fluorine metabolism and in the biosynthesis of the antibiotic thienamycin were mapped on both replicons...
  11. pmc High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies
    Jean Marc Aury
    CEA, DSV, Institut de Génomique, Genoscope, Evry, France
    BMC Genomics 9:603. 2008
    ..So, an appropriate mix of technologies may help resolve most difficulties, and eventually provide assemblies of high quality without requiring any Sanger-based input...
  12. pmc Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence
    Nuria Fonknechten
    Institut de Génomique, Genoscope, 2 rue Gaston Cremieux, F 91057 Evry, France
    BMC Genomics 11:555. 2010
    ..With the goal of revisiting its carbon, nitrogen, and energy metabolism, and comparing studies with other clostridia, its genome has been sequenced and analyzed...
  13. pmc From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later
    Valerie Barbe
    CEA, Institut de Génomique, Genoscope, 2 rue Gaston Cremieux, 91057 Evry, France
    Microbiology 155:1758-75. 2009
    ..subtilis is an epiphyte). This should permit investigators to make reliable inferences to prepare validation experiments in a variety of domains of bacterial growth and development as well as build up accurate phylogenies...
  14. pmc Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125
    Claudine Medigue
    Genoscope, CNRS UMR 8030, Atelier de Génomique Comparative, 91006 Evry Cedex, France
    Genome Res 15:1325-35. 2005
    ..Adding to its originality, P. haloplanktis further differs from its marine counterparts with recruitment of a plasmid origin of replication for its second chromosome...
  15. pmc MaGe: a microbial genome annotation system supported by synteny results
    David Vallenet
    Atelier de Génomique Comparative, CNRS UMR8030, 2 rue Gaston Cremieux, 91057 Evry, Cedex, France
    Nucleic Acids Res 34:53-65. 2006
    ..In addition, MaGe allows for annotation curation and exploration of already published genomes from various genera (e.g. Yersinia, Bacillus and Neisseria). MaGe can be accessed at http://www.genoscope.cns.fr/agc/mage...
  16. pmc Comparative analysis of Acinetobacters: three genomes for three lifestyles
    David Vallenet
    Génomique Métabolique, CNRS UMR8030, CEA Institut de Génomique Genoscope, Evry, France
    PLoS ONE 3:e1805. 2008
    ..Taken together, all these observations suggest that the genome contents of the 3 Acinetobacters compared are partly shaped by life in distinct ecological niches: human (and more largely hospital environment), louse, soil...
  17. ncbi request reprint The DNA sequence and analysis of human chromosome 14
    Roland Heilig
    Genoscope Centre National de Séquençage, 91000, Evry, France
    Nature 421:601-7. 2003
    ..From an analysis of the CpG island occurrences, we estimate that 70% of these annotated genes are complete at their 5' end...
  18. pmc The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment
    Gilles De Luca
    CEA, Lab Ecol Microbienne Rhizosphere and Environm Extre, IBEB, DSV, Saint Paul lez Durance, France
    PLoS ONE 6:e23784. 2011
    ....