Mohamed Barakat

Summary

Country: France

Publications

  1. pmc P2CS: a two-component system resource for prokaryotic signal transduction research
    Mohamed Barakat
    CEA, DSV, IBEB, LEMiRE, CNRS, Université Aix Marseille II, CEA Cadarache, F 13108 Saint Paul lez Durance, France
    BMC Genomics 10:315. 2009
  2. pmc P2RP: a Web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes
    Mohamed Barakat
    CEA, Saint Paul lez Durance, France
    BMC Genomics 14:269. 2013
  3. pmc P2CS: a database of prokaryotic two-component systems
    Mohamed Barakat
    CEA, DSV, IBEB, SBVME, LEMiRE, F 13108 Saint Paul lez Durance, France
    Nucleic Acids Res 39:D771-6. 2011
  4. ncbi request reprint The desert of Tataouine: an extreme environment that hosts a wide diversity of microorganisms and radiotolerant bacteria
    Angélique Chanal
    LEMIR, DEVM, DSV, UMR 6191 CNRS CEA Université Aix Marseille II, IFR 112, CEA Cadarache, F 13108 Saint Paul lez Durance, France
    Environ Microbiol 8:514-25. 2006
  5. pmc P2TF: a comprehensive resource for analysis of prokaryotic transcription factors
    Philippe Ortet
    CEA, DSV, IBEB, SBVME, LEMiRE, Saint Paul lez Durance, France
    BMC Genomics 13:628. 2012
  6. pmc The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment
    Gilles De Luca
    CEA, Lab Ecol Microbienne Rhizosphere and Environm Extre, IBEB, DSV, Saint Paul lez Durance, France
    PLoS ONE 6:e23784. 2011
  7. pmc Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti
    Arjan de Groot
    Laboratory of Microbial Ecology of the Rhizosphere and Extreme Environments LEMiRE, Saint Paul lez Durance, France
    PLoS Genet 5:e1000434. 2009
  8. pmc Reversible oxygen-tolerant hydrogenase carried by free-living N2-fixing bacteria isolated from the rhizospheres of rice, maize, and wheat
    Philippe Roumagnac
    CIRAD, UMR BGPI, Campus International de Montferrier Baillarguet, F 34398, Montpellier Cedex 5, France
    Microbiologyopen 1:349-61. 2012
  9. ncbi request reprint A morphological transition in the pleomorphic bacterium Ramlibacter tataouinensis TTB310
    Maxime Gommeaux
    Laboratoire d Ecologie Microbienne de la Rhizosphere, CEA Cadarache, DSV DEVM, UMR 6191 CNRS CEA Université Aix Marseille 2, 13108 Saint Paul lez Durance Cedex, France
    Res Microbiol 156:1026-30. 2005
  10. pmc Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum
    Philippe Ortet
    CEA, DSV, IBEB, SBVME, Lab Ecol Microb Rhizosphere and Environ Extrem LEMiRE, Saint Paul lez Durance, F 13108, France
    J Bacteriol 193:3146. 2011

Collaborators

Detail Information

Publications11

  1. pmc P2CS: a two-component system resource for prokaryotic signal transduction research
    Mohamed Barakat
    CEA, DSV, IBEB, LEMiRE, CNRS, Université Aix Marseille II, CEA Cadarache, F 13108 Saint Paul lez Durance, France
    BMC Genomics 10:315. 2009
    ..These systems respond to a wide range of stimuli by triggering diverse physiological adjustments, including alterations in gene expression, enzymatic reactions, or protein-protein interactions...
  2. pmc P2RP: a Web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes
    Mohamed Barakat
    CEA, Saint Paul lez Durance, France
    BMC Genomics 14:269. 2013
    ..There is a need for user-friendly, fast and convenient tools to allow researchers to overcome the inherent variability in annotation between genome sequences...
  3. pmc P2CS: a database of prokaryotic two-component systems
    Mohamed Barakat
    CEA, DSV, IBEB, SBVME, LEMiRE, F 13108 Saint Paul lez Durance, France
    Nucleic Acids Res 39:D771-6. 2011
    ....
  4. ncbi request reprint The desert of Tataouine: an extreme environment that hosts a wide diversity of microorganisms and radiotolerant bacteria
    Angélique Chanal
    LEMIR, DEVM, DSV, UMR 6191 CNRS CEA Université Aix Marseille II, IFR 112, CEA Cadarache, F 13108 Saint Paul lez Durance, France
    Environ Microbiol 8:514-25. 2006
    ..A detailed analysis of the resistance levels for two Thermus/Deinococcus and two alpha-Proteobacteria relatives revealed that they correspond to new radiotolerant species...
  5. pmc P2TF: a comprehensive resource for analysis of prokaryotic transcription factors
    Philippe Ortet
    CEA, DSV, IBEB, SBVME, LEMiRE, Saint Paul lez Durance, France
    BMC Genomics 13:628. 2012
    ..There is a need for user-friendly, rigorous and consistent databases to allow researchers to overcome the inherent variability in annotation between genome sequences...
  6. pmc The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment
    Gilles De Luca
    CEA, Lab Ecol Microbienne Rhizosphere and Environm Extre, IBEB, DSV, Saint Paul lez Durance, France
    PLoS ONE 6:e23784. 2011
    ....
  7. pmc Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti
    Arjan de Groot
    Laboratory of Microbial Ecology of the Rhizosphere and Extreme Environments LEMiRE, Saint Paul lez Durance, France
    PLoS Genet 5:e1000434. 2009
    ..The supplementary nutrient import and DNA repair genes are likely important for survival and adaptation of D. deserti to its nutrient-poor, dry, and UV-exposed extreme environment...
  8. pmc Reversible oxygen-tolerant hydrogenase carried by free-living N2-fixing bacteria isolated from the rhizospheres of rice, maize, and wheat
    Philippe Roumagnac
    CIRAD, UMR BGPI, Campus International de Montferrier Baillarguet, F 34398, Montpellier Cedex 5, France
    Microbiologyopen 1:349-61. 2012
    ..These results should bring interesting prospects for microbial biohydrogen production and might have ecophysiological significance for bacterial adaptation to the oxic-anoxic interfaces in the rhizosphere...
  9. ncbi request reprint A morphological transition in the pleomorphic bacterium Ramlibacter tataouinensis TTB310
    Maxime Gommeaux
    Laboratoire d Ecologie Microbienne de la Rhizosphere, CEA Cadarache, DSV DEVM, UMR 6191 CNRS CEA Université Aix Marseille 2, 13108 Saint Paul lez Durance Cedex, France
    Res Microbiol 156:1026-30. 2005
    ..TEM showed that, prior to division and transition into rods, cysts contained condensed cytoplasmic material. These results suggest that the morphological transition occurs by pure reshaping of cells...
  10. pmc Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum
    Philippe Ortet
    CEA, DSV, IBEB, SBVME, Lab Ecol Microb Rhizosphere and Environ Extrem LEMiRE, Saint Paul lez Durance, F 13108, France
    J Bacteriol 193:3146. 2011
    ..In addition, a complete type III secretion system and two complete type VI secretion systems were identified. We report here the first genome sequence of this species...
  11. ncbi request reprint Ramlibacter tataouinensis gen. nov., sp. nov., and Ramlibacter henchirensis sp. nov., cyst-producing bacteria isolated from subdesert soil in Tunisia
    Thierry Heulin
    CEA Cadarache, DSV DEVM, Laboratoire d Ecologie Microbienne de la Rhizosphere, UMR 163, CNRS CEA Univ Méditerranée, F 13108 Saint Paul lez Durance, France
    Int J Syst Evol Microbiol 53:589-94. 2003
    ..The second species is Ramlibacter henchirensis sp. nov., with the type strain TMB834T (=DSM 14656T =ATCC BAA-408T =LMG 21542T). The G + C contents of R. tataouinensis and R. henchirensis are 69.6 and 66.6 mol%, respectively...