Pascal Auffinger

Summary

Country: France

Publications

  1. pmc Halogen bonds in biological molecules
    Pascal Auffinger
    Institut de Biologie Moleculaire et Cellulaire, Centre National de la Recherche Scientifique, Unite Propre de Recherche 9002, Universite Louis Pasteur, 15 rue Rene Descartes, F 67084 Strasbourg, France
    Proc Natl Acad Sci U S A 101:16789-94. 2004
  2. ncbi request reprint Symmetric K+ and Mg2+ ion-binding sites in the 5S rRNA loop E inferred from molecular dynamics simulations
    Pascal Auffinger
    Institut de Biologie Moleculaire et Cellulaire du CNRS, Modélisations et Simulations des Acides Nucléiques, UPR 9002, 15 rue Rene Descartes, 67084 Strasbourg Cedex, France
    J Mol Biol 335:555-71. 2004
  3. ncbi request reprint Nucleic acid solvation: from outside to insight
    Pascal Auffinger
    Architecture et Reactivite de l ARN, Universite Louis Pasteur de Strasbourg, CNRS, IBMC, 15 rue Rene Descartes, 67084 Strasbourg, France
    Curr Opin Struct Biol 17:325-33. 2007
  4. doi request reprint A short guide for molecular dynamics simulations of RNA systems
    Yaser Hashem
    Architecture et Reactivite de l ARN, Universite Louis Pasteur de Strasbourg, IBMC, CNRS, 15 rue Rene Descartes, 67084 Strasbourg Cedex, France
    Methods 47:187-97. 2009
  5. ncbi request reprint Metal ion binding to RNA
    Pascal Auffinger
    Architecture et Reactivite de l ARN, Universite de Strasbourg, IBMC, CNRS, 15 rue Rene Descartes, F 67084, Strasbourg, France
    Met Ions Life Sci 9:1-35. 2011
  6. ncbi request reprint The Mg2+ binding sites of the 5S rRNA loop E motif as investigated by molecular dynamics simulations
    Pascal Auffinger
    Institut de Biologie Moleculaire et Cellulaire du CNRS, Modélisations et Simulations des Acides Nucléiques, UPR 9002, 15 rue Rene Descartes, 67084 Cedex, Strasbourg, France
    Chem Biol 10:551-61. 2003
  7. ncbi request reprint SwS: a solvation web service for nucleic acids
    Pascal Auffinger
    A R N, Universite Louis Pasteur, IBMC CNRS, Strasbourg, France
    Bioinformatics 23:1035-7. 2007

Collaborators

  • Yaser Hashem

Detail Information

Publications7

  1. pmc Halogen bonds in biological molecules
    Pascal Auffinger
    Institut de Biologie Moleculaire et Cellulaire, Centre National de la Recherche Scientifique, Unite Propre de Recherche 9002, Universite Louis Pasteur, 15 rue Rene Descartes, F 67084 Strasbourg, France
    Proc Natl Acad Sci U S A 101:16789-94. 2004
    ..Thus, the specific geometry and diversity of the interacting partners of halogen bonds offer new and versatile tools for the design of ligands as drugs and materials in nanotechnology...
  2. ncbi request reprint Symmetric K+ and Mg2+ ion-binding sites in the 5S rRNA loop E inferred from molecular dynamics simulations
    Pascal Auffinger
    Institut de Biologie Moleculaire et Cellulaire du CNRS, Modélisations et Simulations des Acides Nucléiques, UPR 9002, 15 rue Rene Descartes, 67084 Strasbourg Cedex, France
    J Mol Biol 335:555-71. 2004
    ..Overall, the simulations provide a more precise but, at the same time, a more intricate view of the relations of this motif with its ionic surrounding...
  3. ncbi request reprint Nucleic acid solvation: from outside to insight
    Pascal Auffinger
    Architecture et Reactivite de l ARN, Universite Louis Pasteur de Strasbourg, CNRS, IBMC, 15 rue Rene Descartes, 67084 Strasbourg, France
    Curr Opin Struct Biol 17:325-33. 2007
    ..Many of these recent insights are provided by state-of-the-art molecular dynamics simulations of nucleic acid systems, which will be described together with relevant methodological issues...
  4. doi request reprint A short guide for molecular dynamics simulations of RNA systems
    Yaser Hashem
    Architecture et Reactivite de l ARN, Universite Louis Pasteur de Strasbourg, IBMC, CNRS, 15 rue Rene Descartes, 67084 Strasbourg Cedex, France
    Methods 47:187-97. 2009
    ....
  5. ncbi request reprint Metal ion binding to RNA
    Pascal Auffinger
    Architecture et Reactivite de l ARN, Universite de Strasbourg, IBMC, CNRS, 15 rue Rene Descartes, F 67084, Strasbourg, France
    Met Ions Life Sci 9:1-35. 2011
    ..The analysis is complicated by the fact that the assignment is not always accurate, often done under sub-optimal conditions, which further limits the generalization about the types of interactions these ions can establish...
  6. ncbi request reprint The Mg2+ binding sites of the 5S rRNA loop E motif as investigated by molecular dynamics simulations
    Pascal Auffinger
    Institut de Biologie Moleculaire et Cellulaire du CNRS, Modélisations et Simulations des Acides Nucléiques, UPR 9002, 15 rue Rene Descartes, 67084 Cedex, Strasbourg, France
    Chem Biol 10:551-61. 2003
    ....
  7. ncbi request reprint SwS: a solvation web service for nucleic acids
    Pascal Auffinger
    A R N, Universite Louis Pasteur, IBMC CNRS, Strasbourg, France
    Bioinformatics 23:1035-7. 2007
    ..This web service has been designed to allow a maximum of flexibility in terms of queries and has also been developed with didactic considerations in mind. AVAILABILITY: http://www-ibmc.u-strasbg.fr/arn/sws.html..