Elizabeth A Dinsdale

Summary

Publications

  1. pmc Multivariate analysis of functional metagenomes
    Elizabeth A Dinsdale
    Department of Biology, San Diego State University San Diego, CA, USA
    Front Genet 4:41. 2013
  2. pmc Microbes, metagenomes and marine mammals: enabling the next generation of scientist to enter the genomic era
    Robert Alan Edwards
    Computer Sciences Department, San Diego State University, 5500 Campanile Dr, San Diego 92182, CA, USA
    BMC Genomics 14:600. 2013
  3. pmc Microbial ecology of four coral atolls in the Northern Line Islands
    Elizabeth A Dinsdale
    Department of Biology, San Diego State University, San Diego, California, USA
    PLoS ONE 3:e1584. 2008
  4. doi request reprint Functional metagenomic profiling of nine biomes
    Elizabeth A Dinsdale
    Department of Biology, San Diego State University, San Diego, California 92182, USA
    Nature 452:629-32. 2008
  5. doi request reprint Oxygen minimum zones harbour novel viral communities with low diversity
    Noriko Cassman
    Department of Biology, San Diego State University, San Diego, CA 92182, USA
    Environ Microbiol 14:3043-65. 2012
  6. pmc The lagoon at Caroline/Millennium atoll, Republic of Kiribati: natural history of a nearly pristine ecosystem
    Katie L Barott
    Department of Biology, San Diego State University, San Diego, California, United States of America
    PLoS ONE 5:e10950. 2010
  7. pmc Metagenomic insights into anaerobic metabolism along an Arctic peat soil profile
    David A Lipson
    San Diego State University, San Diego, California, United States of America
    PLoS ONE 8:e64659. 2013
  8. ncbi request reprint Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors
    Linda W Kelly
    Department of Biology, San Diego State University, San Diego, CA 92182
    Proc Natl Acad Sci U S A 111:10227-32. 2014
  9. pmc The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes
    Florent E Angly
    Biology Department, San Diego State University, San Diego, California, United States of America
    PLoS Comput Biol 5:e1000593. 2009
  10. pmc Baselines and degradation of coral reefs in the Northern Line Islands
    Stuart A Sandin
    Center for Marine Biodiversity and Conservation, Scripps Institution of Oceanography, La Jolla, California, USA
    PLoS ONE 3:e1548. 2008

Detail Information

Publications12

  1. pmc Multivariate analysis of functional metagenomes
    Elizabeth A Dinsdale
    Department of Biology, San Diego State University San Diego, CA, USA
    Front Genet 4:41. 2013
    ..Several analyses identified the subtle differences that occur with environments, such as those seen in different regions of the marine environment...
  2. pmc Microbes, metagenomes and marine mammals: enabling the next generation of scientist to enter the genomic era
    Robert Alan Edwards
    Computer Sciences Department, San Diego State University, 5500 Campanile Dr, San Diego 92182, CA, USA
    BMC Genomics 14:600. 2013
    ..Here we present a cross-disciplinary course that provides undergraduate students with practical experience in running a next generation sequencing instrument through to the analysis and annotation of the generated DNA sequences...
  3. pmc Microbial ecology of four coral atolls in the Northern Line Islands
    Elizabeth A Dinsdale
    Department of Biology, San Diego State University, San Diego, California, USA
    PLoS ONE 3:e1584. 2008
    ..Obtaining the microbial data set, from atolls is particularly important given the association of microbes in the ongoing degradation of coral reef ecosystems worldwide...
  4. doi request reprint Functional metagenomic profiling of nine biomes
    Elizabeth A Dinsdale
    Department of Biology, San Diego State University, San Diego, California 92182, USA
    Nature 452:629-32. 2008
    ....
  5. doi request reprint Oxygen minimum zones harbour novel viral communities with low diversity
    Noriko Cassman
    Department of Biology, San Diego State University, San Diego, CA 92182, USA
    Environ Microbiol 14:3043-65. 2012
    ....
  6. pmc The lagoon at Caroline/Millennium atoll, Republic of Kiribati: natural history of a nearly pristine ecosystem
    Katie L Barott
    Department of Biology, San Diego State University, San Diego, California, United States of America
    PLoS ONE 5:e10950. 2010
    ..While the remote nature of Millennium has allowed it to remain one of the few nearly pristine coral reef ecosystems in the world, it is imperative that this ecosystem receives protection so that it may survive for future generations...
  7. pmc Metagenomic insights into anaerobic metabolism along an Arctic peat soil profile
    David A Lipson
    San Diego State University, San Diego, California, United States of America
    PLoS ONE 8:e64659. 2013
    ..Methanogens appear to coexist in the same layers, though in lower abundance, with Fe reducing bacteria and other potential competitors, including acetogens. These observations provide a rich set of hypotheses for further targeted study...
  8. ncbi request reprint Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors
    Linda W Kelly
    Department of Biology, San Diego State University, San Diego, CA 92182
    Proc Natl Acad Sci U S A 111:10227-32. 2014
    ..These results support the hypothesis that core microbiomes are determined by holobiont macroorganisms, and that those core taxa adapt to local conditions by selecting for advantageous metabolic genes. ..
  9. pmc The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes
    Florent E Angly
    Biology Department, San Diego State University, San Diego, California, United States of America
    PLoS Comput Biol 5:e1000593. 2009
    ....
  10. pmc Baselines and degradation of coral reefs in the Northern Line Islands
    Stuart A Sandin
    Center for Marine Biodiversity and Conservation, Scripps Institution of Oceanography, La Jolla, California, USA
    PLoS ONE 3:e1548. 2008
    ..Thus, protection from overfishing and pollution appears to increase the resilience of reef ecosystems to the effects of global warming...
  11. ncbi request reprint A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
    Bas E Dutilh
    1 Centre for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud University Medical Centre, Geert Grooteplein 28, 6525 GA Nijmegen, The Netherlands 2 Department of Computer Science, San Diego State University, 5500 Campanile Drive, San Diego, California 92182, USA 3 Department of Biology, San Diego State University, 5500 Campanile Drive, San Diego, California 92182, USA 4 Department of Marine Biology, Institute of Biology, Federal University of Rio de Janeiro, Av Carlos Chagas Fo 373, Prédio Anexo ao Bloco A do Centro de Ciências da Saúde, Ilha do Fundao, CEP 21941 902 Rio de Janeiro, Brazil
    Nat Commun 5:4498. 2014
    ..Using a new co-occurrence profiling approach, we predict a Bacteroides host for this phage, consistent with Bacteroides-related protein homologues and a unique carbohydrate-binding domain encoded in the phage genome. ..
  12. ncbi request reprint Assessing anchor damage on coral reefs: a case study in selection of environmental indicators
    Elizabeth A Dinsdale
    School of Tropical Environment Studies and Geography, James Cook University, Townsville, Queensland 4811, Australia
    Environ Manage 33:126-39. 2004
    ..The indicator selection framework developed here has the advantages of being transparent, cost efficient, and readily transferable to other types of human activities and management strategies...