Ole Nørregaard Jensen

Summary

Affiliation: University of Southern Denmark
Country: Denmark

Publications

  1. ncbi request reprint Interpreting the protein language using proteomics
    Ole N Jensen
    Protein Research Group, Department of Biochemistry and Molecular Biology, University of Southern Denmark, DK 5230 Odense M, Denmark
    Nat Rev Mol Cell Biol 7:391-403. 2006
  2. pmc Functional proteomics of barley and barley chloroplasts - strategies, methods and perspectives
    Jørgen Petersen
    Department of Biochemistry and Molecular Biology, University of Southern Denmark Odense, Denmark
    Front Plant Sci 4:52. 2013
  3. ncbi request reprint Modification-specific proteomics: characterization of post-translational modifications by mass spectrometry
    Ole Nørregaard Jensen
    Protein Research Group, Department of Biochemistry and Molecular Biology, University of Southern Denmark, DK 5230 Odense M, Denmark
    Curr Opin Chem Biol 8:33-41. 2004
  4. ncbi request reprint Functional proteomics in histone research and epigenetics
    Morten Beck Trelle
    University of Southern Denmark, Center for Epigenetics and Department of Molecular Biology and Biochemistry, Odense M, Denmark
    Expert Rev Proteomics 4:491-503. 2007
  5. ncbi request reprint Assessment and improvement of statistical tools for comparative proteomics analysis of sparse data sets with few experimental replicates
    Veit Schwämmle
    Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK 5230 Odense M, Denmark
    J Proteome Res 12:3874-83. 2013
  6. doi request reprint Quantitative proteomics of primary tumors with varying metastatic capabilities using stable isotope-labeled proteins of multiple histogenic origins
    Rikke Raaen Lund
    Department of Cancer and Inflammation Research, Institute of Molecular Medicine, University of Southern Denmark, Odense, Denmark
    Proteomics 12:2139-48. 2012
  7. ncbi request reprint Tissue specific phosphorylation of mitochondrial proteins isolated from rat liver, heart muscle, and skeletal muscle
    Steffen Bak
    Section of Molecular Diabetes and Metabolism, Department of Endocrinology, Odense University Hospital, and Institute of Clinical Research, University of Southern Denmark, DK 5000 Odense C, Denmark
    J Proteome Res 12:4327-39. 2013
  8. pmc A computational model for histone mark propagation reproduces the distribution of heterochromatin in different human cell types
    Veit Schwämmle
    Department for Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark
    PLoS ONE 8:e73818. 2013
  9. ncbi request reprint Phosphoric acid enhances the performance of Fe(III) affinity chromatography and matrix-assisted laser desorption/ionization tandem mass spectrometry for recovery, detection and sequencing of phosphopeptides
    Allan Stensballe
    Department of Biochemistry and Molecular Biology, University of Southern Denmark, DK 5230 Odense M, Denmark
    Rapid Commun Mass Spectrom 18:1721-30. 2004
  10. ncbi request reprint Analysis of protein-nucleic acid interactions by photochemical cross-linking and mass spectrometry
    Hanno Steen
    Department of Biochemistry and Molecular Biology, University of Southern Denmark, DK 5230 Odense M, Denmark
    Mass Spectrom Rev 21:163-82. 2002

Collaborators

  • Veit Schwämmle
  • Hanno Steen
  • Matthias Mann
  • Jens S Andersen
  • Morten Beck Trelle
  • Martin R Larsen
  • Steffen Bak
  • Jørgen Petersen
  • Pia Hønnerup Jensen
  • Rikke Raaen Lund
  • Arkadiusz Nawrocki
  • Allan Stensballe
  • Anne J Kleinnijenhuis
  • David S Selby
  • Allan L Thomsen
  • Kirstin J Milks
  • Sven Kjellström
  • Mads Grønborg
  • Simon Mysling
  • Adelina Rogowska-Wrzesinska
  • Ileana R León
  • Kurt Højlund
  • Peter Højrup
  • Mikkel Green Terp
  • Rikke Leth-Larsen
  • Anne Vibeke Laenkholm
  • Henrik Jørn Ditzel
  • Kristian Thorup-Kristensen
  • Cosima Damiana Calvano
  • Olaf Georg Issinger
  • Claus Hedegaard
  • Poul Henning Jensen
  • Ditte Lundvig
  • Sabrina Sundbye
  • Rune Matthiesen
  • Kris Laukens
  • Marianne Danielsen
  • Raymond P Cox
  • Søren Persson
  • Mette Miller
  • Troels Zakarias Kristiansen
  • Akhilesh Pandey
  • Osamu Ohara

Detail Information

Publications19

  1. ncbi request reprint Interpreting the protein language using proteomics
    Ole N Jensen
    Protein Research Group, Department of Biochemistry and Molecular Biology, University of Southern Denmark, DK 5230 Odense M, Denmark
    Nat Rev Mol Cell Biol 7:391-403. 2006
    ....
  2. pmc Functional proteomics of barley and barley chloroplasts - strategies, methods and perspectives
    Jørgen Petersen
    Department of Biochemistry and Molecular Biology, University of Southern Denmark Odense, Denmark
    Front Plant Sci 4:52. 2013
    ..We describe several different proteomics strategies and discuss their applications in characterization of the barley chloroplast as well as future perspectives for functional proteomics in barley research...
  3. ncbi request reprint Modification-specific proteomics: characterization of post-translational modifications by mass spectrometry
    Ole Nørregaard Jensen
    Protein Research Group, Department of Biochemistry and Molecular Biology, University of Southern Denmark, DK 5230 Odense M, Denmark
    Curr Opin Chem Biol 8:33-41. 2004
    ....
  4. ncbi request reprint Functional proteomics in histone research and epigenetics
    Morten Beck Trelle
    University of Southern Denmark, Center for Epigenetics and Department of Molecular Biology and Biochemistry, Odense M, Denmark
    Expert Rev Proteomics 4:491-503. 2007
    ..In this review, we introduce the basic concepts and recent developments of mass spectrometry, as well as immunochemical techniques and their applications in the analysis of histone modifications...
  5. ncbi request reprint Assessment and improvement of statistical tools for comparative proteomics analysis of sparse data sets with few experimental replicates
    Veit Schwämmle
    Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK 5230 Odense M, Denmark
    J Proteome Res 12:3874-83. 2013
    ..An R script that implements the improved rank products algorithm and the combined analysis is available. ..
  6. doi request reprint Quantitative proteomics of primary tumors with varying metastatic capabilities using stable isotope-labeled proteins of multiple histogenic origins
    Rikke Raaen Lund
    Department of Cancer and Inflammation Research, Institute of Molecular Medicine, University of Southern Denmark, Odense, Denmark
    Proteomics 12:2139-48. 2012
    ..Our study demonstrates an improved strategy for quantitative comparison of an unlimited number of tumor tissues, and provides novel insights into key proteins associated with the colonization phase of metastasis formation...
  7. ncbi request reprint Tissue specific phosphorylation of mitochondrial proteins isolated from rat liver, heart muscle, and skeletal muscle
    Steffen Bak
    Section of Molecular Diabetes and Metabolism, Department of Endocrinology, Odense University Hospital, and Institute of Clinical Research, University of Southern Denmark, DK 5000 Odense C, Denmark
    J Proteome Res 12:4327-39. 2013
    ....
  8. pmc A computational model for histone mark propagation reproduces the distribution of heterochromatin in different human cell types
    Veit Schwämmle
    Department for Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark
    PLoS ONE 8:e73818. 2013
    ..Generally, the regulatory program of gene transcription is controlled by the distribution of nucleation sites along the DNA string. ..
  9. ncbi request reprint Phosphoric acid enhances the performance of Fe(III) affinity chromatography and matrix-assisted laser desorption/ionization tandem mass spectrometry for recovery, detection and sequencing of phosphopeptides
    Allan Stensballe
    Department of Biochemistry and Molecular Biology, University of Southern Denmark, DK 5230 Odense M, Denmark
    Rapid Commun Mass Spectrom 18:1721-30. 2004
    ..The enhanced response of phosphopeptide ions in MALDI facilitates MS/MS of large (>3 kDa) multiply phosphorylated peptide species and reduces the amount of analyte needed for complete characterization of phosphoproteins...
  10. ncbi request reprint Analysis of protein-nucleic acid interactions by photochemical cross-linking and mass spectrometry
    Hanno Steen
    Department of Biochemistry and Molecular Biology, University of Southern Denmark, DK 5230 Odense M, Denmark
    Mass Spectrom Rev 21:163-82. 2002
    ....
  11. doi request reprint Glycopeptide enrichment for MALDI-TOF mass spectrometry analysis by hydrophilic interaction liquid chromatography solid phase extraction (HILIC SPE)
    Pia Hønnerup Jensen
    Institute of Molecular Medicine, University of Southern Denmark, Odense, Denmark
    Methods Mol Biol 951:131-44. 2013
    ..Finally, we demonstrate HILIC enrichment using trifluoroacetic acid as an ion-pairing reagent for the enrichment of glycopeptides prior to mass spectrometry analysis...
  12. ncbi request reprint In situ liquid-liquid extraction as a sample preparation method for matrix-assisted laser desorption/ionization MS analysis of polypeptide mixtures
    Sven Kjellström
    Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK 5230 Odense M, Denmark
    Anal Chem 75:2362-9. 2003
    ....
  13. doi request reprint Quantitative proteomics by 2DE and MALDI MS/MS uncover the effects of organic and conventional cropping methods on vegetable products
    Arkadiusz Nawrocki
    Department Biochemistry and Molecular Biology, University of Southern Denmark, DK 5230 Odense, Denmark
    J Proteomics 74:2810-25. 2011
    ..In conclusion, this proteomics platform is suitable and useful for systematic studies of the effects of organic and conventional farming techniques on plant metabolism...
  14. doi request reprint Identification and characterization of N-glycosylated proteins using proteomics
    David S Selby
    Protein Research Group, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark
    Methods Mol Biol 484:263-76. 2008
    ....
  15. doi request reprint A simple and fast method to determine the parameters for fuzzy c-means cluster analysis
    Veit Schwämmle
    Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK 5230 Odense M, Denmark
    Bioinformatics 26:2841-8. 2010
    ..The optimal solution has parameter values for which the clustering does not yield any results for a purely random dataset but which detects cluster formation with maximum resolution on the edge of randomness...
  16. doi request reprint Identification of multiple post-translational modifications in the porcine brain specific p25alpha
    Anne J Kleinnijenhuis
    Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark
    J Neurochem 106:925-33. 2008
    ..This comprehensive mapping of p25alpha's PTMs will form the basis for future functional studies and investigations of p25alpha's potential role as a biomarker...
  17. ncbi request reprint Organization of proteomics data with YassDB
    Allan L Thomsen
    Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense
    Methods Mol Biol 367:271-87. 2007
    ..The setup and use of the YassDB database application with two client programs "pProRep" and "VEMS" will be outlined...
  18. ncbi request reprint Chlorosome proteins studied by MALDI-TOF-MS: topology of CsmA in Chlorobium tepidum
    Kirstin J Milks
    Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, 5230, Odense M, Denmark
    Photosynth Res 86:113-21. 2005
    ..These results indicate that the N-terminal portion of the CsmA protein, which is predicted to be mainly hydrophobic, is buried in the chlorosome envelope...
  19. ncbi request reprint A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: identification of a novel protein, Frigg, as a protein kinase A substrate
    Mads Grønborg
    Department of Biochemistry and Molecular Biology, Center for Experimental Bioinformatics, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark
    Mol Cell Proteomics 1:517-27. 2002
    ..Our method should be applicable as a generic strategy for enrichment and identification of serine/threonine-phosphorylated substrates in signal transduction pathways...