Research Topics
| Søren MolinSummaryAffiliation: Technical University of Denmark Country: Denmark Publications
| Collaborators
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Detail Information
Publications
Structure-based discovery of inhibitors of the YycG histidine kinase: new chemical leads to combat Staphylococcus epidermidis infectionsZhiqiang Qin
Key Laboratory of Medical Molecular Virology, Ministry of Education and Ministry of Public Health, Institute of Medical Microbiology, Shanghai Medical School of Fudan University, Shanghai, PR China
BMC Microbiol 6:96. 2006..It has an urgent need to design novel antibiotics against staphylococci infections, especially those can kill cells embedded in biofilm...
Gene transfer occurs with enhanced efficiency in biofilms and induces enhanced stabilisation of the biofilm structureSøren Molin
Molecular Microbial Ecology Group, BioCentrum DTU, Technical University of Denmark, Building 301, 2800 Lyngby, Denmark
Curr Opin Biotechnol 14:255-61. 2003..Both of these gene-transfer mechanisms may be autocatalytically promoted in biofilms, presenting new possibilities for efficient bio-enhancement strategies...
Early adaptive developments of Pseudomonas aeruginosa after the transition from life in the environment to persistent colonization in the airways of human cystic fibrosis hostsMartin Holm Rau
Department of Systems Biology, Technical University of Denmark, Building 301, 2800 Lyngby, Denmark
Environ Microbiol 12:1643-58. 2010..In the overall perspective the global phenotype of the adapted variants appears to place them on paths in direction of fully adapted strains residing in long-term chronically infected patients...
Evolution and diversification of Pseudomonas aeruginosa in the paranasal sinuses of cystic fibrosis children have implications for chronic lung infectionSusse Kirkelund Hansen
Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
ISME J 6:31-45. 2012..Thus, the paranasal sinuses potentially constitute a protected niche of adapted clones of P. aeruginosa, which can intermittently seed the lungs and pave the way for subsequent chronic lung infections...
Evolutionary dynamics of bacteria in a human host environmentLei Yang
Department of Systems Biology, Technical University of Denmark, 2800 Lyngby, Denmark
Proc Natl Acad Sci U S A 108:7481-6. 2011..The evolved phenotype of the infecting bacteria further suggests that the opportunistic pathogen has transitioned to become a primary pathogen for cystic fibrosis patients...
Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: an evolutionary perspectiveAnders Folkesson
Department of Systems Biology, Technical University of Denmark, 2800 Lyngby, Denmark
Nat Rev Microbiol 10:841-51. 2012..We believe that such studies are valuable not only for our understanding of bacterial evolution but also for the future development of new therapeutic strategies to treat severe chronic infections...
Bacterial adaptation during chronic infection revealed by independent component analysis of transcriptomic dataLei Yang
Department of Systems Biology, Technical University of Denmark, DK 2800, Lyngby, Denmark
BMC Microbiol 11:184. 2011..However, exploitation of the complex, noisy and high-dimensional transcriptomic dataset is difficult and often hindered by low statistical power...
Characterization of a Pseudomonas putida rough variant evolved in a mixed-species biofilm with Acinetobacter sp. strain C6Susse Kirkelund Hansen
Infection Microbiology Group, BioCentrum DTU, Technical University of Denmark, DK 2800 Lyngby, Denmark
J Bacteriol 189:4932-43. 2007..The resulting phenotypic characteristics of the P. putida rough variant explain its enhanced fitness and ability to form tight structural associations with Acinetobacter microcolonies...
Mutations in 23S rRNA confer resistance against azithromycin in Pseudomonas aeruginosaRasmus Lykke Marvig
Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
Antimicrob Agents Chemother 56:4519-21. 2012....
In situ growth rates and biofilm development of Pseudomonas aeruginosa populations in chronic lung infectionsLei Yang
Infection Microbiology Group, BioCentrum DTU, Technical University of Denmark, Building 301, 2800 Lyngby, Denmark
J Bacteriol 190:2767-76. 2008..This scenario constitutes a new perspective on the adaptation and evolution of P. aeruginosa during chronic infections in CF patients in particular and on long-term infections in general...
Biofilm induced tolerance towards antimicrobial peptidesAnders Folkesson
Infection Microbiology Group, BioCentrum DTU, Technical University of Denmark, Lyngby, Denmark
PLoS ONE 3:e1891. 2008....
Polysaccharides serve as scaffold of biofilms formed by mucoid Pseudomonas aeruginosaLiang Yang
Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
FEMS Immunol Med Microbiol 65:366-76. 2012..aeruginosa biofilm structure maintenance and phagocytosis resistance. The polysaccharides were further found to protect mucoid P. aeruginosa strain from host immune clearance in a mouse model of acute lung infection...
A Mig-14-like protein (PA5003) affects antimicrobial peptide recognition in Pseudomonas aeruginosaNicholas Jochumsen
Center for Systems Microbiology, DTU Systems Biology, Building 301, Technical University of Denmark, DK 2800 Lyngby, Denmark
Microbiology 157:2647-57. 2011..aeruginosa. Moreover, we show that this gene is also required for the formation of CAMP-tolerant subpopulations in P. aeruginosa hydrodynamic flow chamber biofilms...
Combating biofilmsLiang Yang
Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
FEMS Immunol Med Microbiol 65:146-57. 2012....
Pattern differentiation in co-culture biofilms formed by Staphylococcus aureus and Pseudomonas aeruginosaLiang Yang
Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
FEMS Immunol Med Microbiol 62:339-47. 2011..aeruginosa type IV pili are required for this process, probably through their ability to bind to eDNA. Furthermore, P. aeruginosa is able to protect S. aureus against Dictyostelium discoideum phagocytosis in co-culture biofilms...
Distinct roles of extracellular polymeric substances in Pseudomonas aeruginosa biofilm developmentLiang Yang
Center for Systems Microbiology, Department of Systems Biology, Technical University of Denmark, 2800 Lyngby, Denmark
Environ Microbiol 13:1705-17. 2011..Psl polysaccharide is more important than Pel polysaccharide in P. aeruginosa PAO1 biofilm formation and antibiotic resistance. Our study thus suggests that different EPS materials play distinct roles during bacterial biofilm formation...
Effects of colistin on surface ultrastructure and nanomechanics of Pseudomonas aeruginosa cellsNinell P Mortensen
Danish Polymer Centre, Risoe National Laboratory, Technical University of Denmark, DK 4000 Roskilde, Denmark
Langmuir 25:3728-33. 2009....
Current understanding of multi-species biofilmsLiang Yang
Department of Systems Biology, Technical University of Denmark, Lyngby, DK 2800, Denmark
Int J Oral Sci 3:74-81. 2011..The most recent advances in the understanding of multi-species biofilms are summarized and discussed in the review...
Microbial ecology and adaptation in cystic fibrosis airwaysLei Yang
Department of Systems Biology, DTU, 2800 Lyngby, Denmark
Environ Microbiol 13:1682-9. 2011..Understanding the persistent colonization of microbial pathogens in CF patients in the context of ecology and evolution will expand our knowledge of the pathogenesis of chronic infections and improve therapeutic strategies...
Adhesive properties of Staphylococcus epidermidis probed by atomic force microscopyYifan Hu
Department of Chemistry, DTU Chemistry, Building 207, Technical University of Denmark, DK 2800 Lyngby, Denmark
Phys Chem Chem Phys 13:9995-10003. 2011..Treatment of two biofilm positive strains with two chemical inhibitor compounds leads to a loss of adhesion, suggesting that AFM could be a valuable tool to screen for anti-adhesion molecules...
Microfluidic dissolved oxygen gradient generator biochip as a useful tool in bacterial biofilm studiesMaciej Skolimowski
Technical University of Denmark, Department of Micro and Nanotechnology, Ørsted Plads, Building 345east, DK 2800, Kgs Lyngby, Denmark
Lab Chip 10:2162-9. 2010..This demonstrates that the device can be used for studies requiring controlled oxygen levels and for future studies of microaerobic and anaerobic conditions...
Synergistic activities of an efflux pump inhibitor and iron chelators against Pseudomonas aeruginosa growth and biofilm formationYang Liu
Center for Systems Microbiology, Department of Systems Biology, Technical University of Denmark, 2800 Lyngby, Denmark
Antimicrob Agents Chemother 54:3960-3. 2010..All of the tested iron chelators synergistically inhibited P. aeruginosa growth and biofilm formation with PAbetaN. PAbetaN-EDTA showed the most promising activity against P. aeruginosa growth and biofilm formation...
Contribution of alginate and levan production to biofilm formation by Pseudomonas syringaeHeike Laue
Molecular Microbial Ecology Group, BioCentrum DTU, Technical University of Denmark, DK 2800 Lyngby, Denmark
Microbiology 152:2909-18. 2006..syringae derivatives. Production of the as yet uncharacterized additional EPS might be more important for biofilm formation than the syntheses of levan and alginate...
In vitro biofilm formation of commensal and pathogenic Escherichia coli strains: impact of environmental and genetic factorsAndreas Reisner
Molecular Microbial Ecology Group, Center for Biomedical Microbiology, BioCentrum DTU, Technical University of Denmark, Lyngby
J Bacteriol 188:3572-81. 2006..coli isolates in vitro. This study highlights the complexity of genetic and environmental effectors of the biofilm phenotype within the species E. coli...
Differentiation and distribution of colistin- and sodium dodecyl sulfate-tolerant cells in Pseudomonas aeruginosa biofilmsJanus A J Haagensen
Center for Biomedical Microbiology, BioCentrum DTU, Building 301, The Technical University of Denmark, DK 2800 Lyngby, Denmark
J Bacteriol 189:28-37. 2007..These results suggest that increased antibiotic tolerance in biofilms may be a consequence of differentiation into distinct subpopulations with different phenotypic properties...
Evaluation of enoyl-acyl carrier protein reductase inhibitors as Pseudomonas aeruginosa quorum-quenching reagentsLiang Yang
Department of Systems Biology, Technical University of Denmark, Kongens Lyngby, 2800, Denmark
Molecules 15:780-92. 2010..aeruginosa and is an efficient quorum-quenching reagent. EGCG treatment was further shown to be able to attenuate the production of virulence factors and biofilm formation of P. aeruginosa...
High in vitro antimicrobial activity of β-peptoid-peptide hybrid oligomers against planktonic and biofilm cultures of Staphylococcus epidermidisYang Liu
Department of Systems Biology, Technical University of Denmark, Kgs Lyngby, Denmark
Int J Antimicrob Agents 41:20-7. 2013..This class of peptidomimetics may constitute promising antimicrobial alternatives for the prevention and treatment of multidrug-resistant S. epidermidis infections...
Evolution of species interactions in a biofilm communitySusse Kirkelund Hansen
Infection Microbiology Group, BioCentrum DTU, The Technical University of Denmark, Building 301, DK 2800 Lyngby, Denmark
Nature 445:533-6. 2007..Our results show that evolution in a spatially structured environment can stabilize interactions between species, provoke marked changes in their symbiotic nature and affect community function...
Organic compounds inhibiting S. epidermidis adhesion and biofilm formationZhiqiang Qin
Department of Systems Biology, Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
Ultramicroscopy 109:881-8. 2009..These results suggest a pretreatment for medically implanted surfaces that can prevent the biofilm formation and reduce infection...
Deletion and acquisition of genomic content during early stage adaptation of Pseudomonas aeruginosa to a human host environmentMartin H Rau
Department of Systems Biology, Technical University of Denmark, 2800 Lyngby, Denmark
Environ Microbiol 14:2200-11. 2012..Finally, we also describe the complete genome of this highly adapted pathogenic strain of P.aeruginosa to strengthen the genetic basis, which serves to help our understanding of microbial evolution in a natural environment...
Genome-wide identification of novel small RNAs in Pseudomonas aeruginosaMaría Gómez-Lozano
Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
Environ Microbiol 14:2006-16. 2012..We anticipate that the data will be useful for the study of regulatory sRNAs in bacteria and that the approach described here may be applied to identify sRNAs in any bacterium under different growth and stress conditions...
Molecular epidemiology and dynamics of Pseudomonas aeruginosa populations in lungs of cystic fibrosis patientsLars Jelsbak
Infection Microbiology Group, BioCentrum DTU, Technical University of Denmark, Building 301, 2800 Lyngby, Denmark
Infect Immun 75:2214-24. 2007..These findings suggest that hitherto-unrecognized evolutionary pathways may be involved in the development of successful and persistent P. aeruginosa colonizers of CF patient lungs...
Mini-Tn7 transposons for site-specific tagging of bacteria with fluorescent proteinsLotte Lambertsen
Molecular Microbial Ecology Group, Centre for Biomedical Microbiology, BioCentrum DTU, Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
Environ Microbiol 6:726-32. 2004..Successful and site-specific tagging was verified by Southern blots as well as by PCR. Furthermore, the effect of fluorescent protein expression on the cellular growth rate was tested by growth competition assays...
Involvement of bacterial migration in the development of complex multicellular structures in Pseudomonas aeruginosa biofilmsMikkel Klausen
Molecular Microbial Ecology Group, BioCentrum DTU, Technical University of Denmark, DK 2800 Lyngby, Denmark
Mol Microbiol 50:61-8. 2003..The migrating bacteria form the mushroom caps by climbing the stalks and aggregating on the tops in a process which is driven by type-IV pili. These results lead to a new model for biofilm formation by P. aeruginosa...
