Henrik Hornshøj

Summary

Affiliation: Danish Institute of Agricultural Sciences
Country: Denmark

Publications

  1. pmc Gene expression profiles in liver of pigs with extreme high and low levels of androstenone
    Maren Moe
    The Norwegian Pig Breeders Association NORSVIN, Hamar, Norway
    BMC Vet Res 4:29. 2008
  2. pmc Gene set analysis methods applied to chicken microarray expression data
    Axel Skarman
    Department of Genetics and Biotechnology, Faculty of Agricultural Sciences, Aarhus University, DK 8830 Tjele, Denmark
    BMC Proc 3:S8. 2009
  3. pmc Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs
    Vincent Jouffe
    Laboratoire PsyNuGen, INRA UMR1286, CNRS UMR5226, , , F 33076 Bordeaux, France
    BMC Proc 3:S14. 2009
  4. pmc Comparative analysis of protein coding sequences from human, mouse and the domesticated pig
    Frank Grønlund Jørgensen
    Department of Ecology and Genetics, University of Aarhus, Aarhus C, Denmark
    BMC Biol 3:2. 2005
  5. pmc Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies
    Henrik Hornshøj
    Department of Genetics and Biotechnology, Faculty of Agricultural Sciences, Aarhus University, Tjele, Denmark
    BMC Genomics 10:30. 2009
  6. ncbi request reprint SEPON, a Selection and Evaluation Pipeline for OligoNucleotides based on ESTs with a non-target Tm algorithm for reducing cross-hybridization in microarray gene expression experiments
    Henrik Hornshøj
    Department of Animal Breeding and Genetics, Danish Institute of Agricultural Sciences, Research Center Foulum, DK 8830 Tjele, Denmark
    Bioinformatics 20:428-9. 2004
  7. ncbi request reprint SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation
    Frank Panitz
    Department of Genetics and Biotechnology, Faculty of Agricultural Sciences, University of Aarhus, DK 8830 Tjele, Denmark
    Bioinformatics 23:i387-91. 2007
  8. doi request reprint Gene expression profiling of porcine skeletal muscle in the early recovery phase following acute physical activity
    Jeanette H Jensen
    Aarhus University, Department of Molecular Biology and Genetics, Blichers Alle, DK 8830, Tjele, Denmark
    Exp Physiol 97:833-48. 2012
  9. pmc A robust linkage map of the porcine autosomes based on gene-associated SNPs
    Rikke K K Vingborg
    Department of Genetics and Biotechnology, Faculty of Agricultural Sciences, Aarhus University, Tjele, Denmark
    BMC Genomics 10:134. 2009
  10. pmc Microarray expression profiles of 20.000 genes across 23 healthy porcine tissues
    Henrik Hornshøj
    Department of Genetics and Biotechnology, Faculty of Agricultural Sciences, University of Aarhus, Tjele, Denmark
    PLoS ONE 2:e1203. 2007

Collaborators

Detail Information

Publications14

  1. pmc Gene expression profiles in liver of pigs with extreme high and low levels of androstenone
    Maren Moe
    The Norwegian Pig Breeders Association NORSVIN, Hamar, Norway
    BMC Vet Res 4:29. 2008
    ..In this study, microarrays were used to identify differentially expressed genes and pathways related to androstenone metabolism in the liver from boars with extreme levels of androstenone in adipose tissue...
  2. pmc Gene set analysis methods applied to chicken microarray expression data
    Axel Skarman
    Department of Genetics and Biotechnology, Faculty of Agricultural Sciences, Aarhus University, DK 8830 Tjele, Denmark
    BMC Proc 3:S8. 2009
    ..Methods for predicting the possible annotations for genes with unknown function from the expression data at hand could be useful, but our results indicate that careful validation of the predictions is needed...
  3. pmc Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs
    Vincent Jouffe
    Laboratoire PsyNuGen, INRA UMR1286, CNRS UMR5226, , , F 33076 Bordeaux, France
    BMC Proc 3:S14. 2009
    ..The results illustrate the challenges that must be addressed but also provide a roadmap for future work that is applicable to other non-model species...
  4. pmc Comparative analysis of protein coding sequences from human, mouse and the domesticated pig
    Frank Grønlund Jørgensen
    Department of Ecology and Genetics, University of Aarhus, Aarhus C, Denmark
    BMC Biol 3:2. 2005
    ....
  5. pmc Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies
    Henrik Hornshøj
    Department of Genetics and Biotechnology, Faculty of Agricultural Sciences, Aarhus University, Tjele, Denmark
    BMC Genomics 10:30. 2009
    ..Furthermore, most comparisons of transcript and protein levels have been based on absolute expression values from within the same tissue and not relative expression values based on tissue ratios...
  6. ncbi request reprint SEPON, a Selection and Evaluation Pipeline for OligoNucleotides based on ESTs with a non-target Tm algorithm for reducing cross-hybridization in microarray gene expression experiments
    Henrik Hornshøj
    Department of Animal Breeding and Genetics, Danish Institute of Agricultural Sciences, Research Center Foulum, DK 8830 Tjele, Denmark
    Bioinformatics 20:428-9. 2004
    ..SEPON allows user-defined filtering, predicts exon location, assigns penalty based on 3' distance, GC content, secondary structure T(m) and non-target T(m) and ranks oligonucleotides for optimal selection...
  7. ncbi request reprint SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation
    Frank Panitz
    Department of Genetics and Biotechnology, Faculty of Agricultural Sciences, University of Aarhus, DK 8830 Tjele, Denmark
    Bioinformatics 23:i387-91. 2007
    ..In addition, it supports direct manual annotation, which is immediately accessible and can be easily shared with external collaborators...
  8. doi request reprint Gene expression profiling of porcine skeletal muscle in the early recovery phase following acute physical activity
    Jeanette H Jensen
    Aarhus University, Department of Molecular Biology and Genetics, Blichers Alle, DK 8830, Tjele, Denmark
    Exp Physiol 97:833-48. 2012
    ..These findings expand the complexity of pathways affected by acute contractile activity of skeletal muscle, contributing to a better understanding of the molecular processes that occur in muscle tissue in the recovery phase...
  9. pmc A robust linkage map of the porcine autosomes based on gene-associated SNPs
    Rikke K K Vingborg
    Department of Genetics and Biotechnology, Faculty of Agricultural Sciences, Aarhus University, Tjele, Denmark
    BMC Genomics 10:134. 2009
    ..The SNPs were identified in sequence alignments of 4,600 different amplicons obtained from the 12 boars and containing coding regions of genes derived from expressed sequence tags (ESTs) and genomic shotgun sequences...
  10. pmc Microarray expression profiles of 20.000 genes across 23 healthy porcine tissues
    Henrik Hornshøj
    Department of Genetics and Biotechnology, Faculty of Agricultural Sciences, University of Aarhus, Tjele, Denmark
    PLoS ONE 2:e1203. 2007
    ..For mammalian species, cataloging of the global gene expression profiles in large tissue collections under normal conditions have been focusing on human and mouse genomes but is lacking for the pig genome...
  11. doi request reprint Pairwise comparisons of ten porcine tissues identify differential transcriptional regulation at the gene, isoform, promoter and transcription start site level
    Leila Farajzadeh
    Department of Molecular Biology and Genetics, Faculty of Sciences and Technology, Aarhus University, DK 8830 Tjele, Denmark
    Biochem Biophys Res Commun 438:346-52. 2013
    ..Furthermore, our analysis shows that the "across tissue approach" has a promising potential when screening for possible explanations for variations, such as those observed at the gene expression levels. ..
  12. pmc Molecular characterisation of the early response in pigs to experimental infection with Actinobacillus pleuropneumoniae using cDNA microarrays
    Jakob Hedegaard
    Department of Genetics and Biotechnology, Faculty of Agricultural Sciences, University of Aarhus, Research Centre Foulum, Tjele, Denmark
    Acta Vet Scand 49:11. 2007
    ..The objective of this study was hence to characterise the transcriptional response, measured by using cDNA microarrays, in pigs 24 hours after experimental inoculation with A. pleuropneumoniae...
  13. pmc Analysis of the real EADGENE data set: multivariate approaches and post analysis (open access publication)
    Peter Sørensen
    University of Aarhus, Faculty of Agricultural Sciences, Dept of Genetics and Biotechnology, PO Box 50 DK 8830 Tjele, Denmark
    Genet Sel Evol 39:651-68. 2007
    ..The main result from these analyses was that gene sets involved in immune defence responses were differentially expressed...
  14. ncbi request reprint Effects of bacterial colonization on the porcine intestinal proteome
    Marianne Danielsen
    Department of Animal Health, Welfare and Nutrition, Faculty of Agricultural Sciences, University of Aarhus, 8830 Tjele, Denmark
    J Proteome Res 6:2596-604. 2007
    ..Regulations related to L. fermentum colonization involved individual markers for immunoregulatory mechanisms...