Mette V Larsen

Summary

Affiliation: Center for Biological Sequence Analysis
Country: Denmark

Publications

  1. pmc Multilocus sequence typing of total-genome-sequenced bacteria
    Mette V Larsen
    Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
    J Clin Microbiol 50:1355-61. 2012
  2. pmc Identification of CD8+ T cell epitopes in the West Nile virus polyprotein by reverse-immunology using NetCTL
    Mette Voldby Larsen
    Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
    PLoS ONE 5:e12697. 2010
  3. pmc Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction
    Mette V Larsen
    Center for Biological Sequence Analysis, BioCentrum DTU, Building 208, Technical University of Denmark, DK 2800 Lyngby, Denmark
    BMC Bioinformatics 8:424. 2007
  4. pmc The cancer exome generated by alternative mRNA splicing dilutes predicted HLA class I epitope density
    Thomas Stranzl
    Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
    PLoS ONE 7:e38670. 2012
  5. pmc Systematic characterisation of cellular localisation and expression profiles of proteins containing MHC ligands
    Agnieszka S Juncker
    Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
    PLoS ONE 4:e7448. 2009

Detail Information

Publications5

  1. pmc Multilocus sequence typing of total-genome-sequenced bacteria
    Mette V Larsen
    Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
    J Clin Microbiol 50:1355-61. 2012
    ..The method presented here enables investigators to determine the sequence types of their isolates on the basis of WGS data. This method is publicly available at www.cbs.dtu.dk/services/MLST...
  2. pmc Identification of CD8+ T cell epitopes in the West Nile virus polyprotein by reverse-immunology using NetCTL
    Mette Voldby Larsen
    Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
    PLoS ONE 5:e12697. 2010
    ..West Nile virus (WNV) is a growing threat to public health and a greater understanding of the immune response raised against WNV is important for the development of prophylactic and therapeutic strategies...
  3. pmc Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction
    Mette V Larsen
    Center for Biological Sequence Analysis, BioCentrum DTU, Building 208, Technical University of Denmark, DK 2800 Lyngby, Denmark
    BMC Bioinformatics 8:424. 2007
    ..Here, we develop such large-scale benchmark and corresponding performance measures and report the performance of an updated version 1.2 of NetCTL in comparison with the four other methods...
  4. pmc The cancer exome generated by alternative mRNA splicing dilutes predicted HLA class I epitope density
    Thomas Stranzl
    Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
    PLoS ONE 7:e38670. 2012
    ..This variation contributes to the observed significant lower likelihood of cancer-specific peptides to be predicted epitopes compared to peptides found in normal tissue...
  5. pmc Systematic characterisation of cellular localisation and expression profiles of proteins containing MHC ligands
    Agnieszka S Juncker
    Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
    PLoS ONE 4:e7448. 2009
    ..Presentation of peptides on Major Histocompatibility Complex (MHC) molecules is the cornerstone in immune system activation and increased knowledge of the characteristics of MHC ligands and their source proteins is highly desirable...