Rodrigo Gouveia-Oliveira

Summary

Affiliation: Center for Biological Sequence Analysis
Country: Denmark

Publications

  1. pmc MaxAlign: maximizing usable data in an alignment
    Rodrigo Gouveia-Oliveira
    Center for Biological Sequence Analysis, Technical University of Denmark, Building 208, DK 2800 Lyngby, Denmark
    BMC Bioinformatics 8:312. 2007
  2. doi request reprint Higher variability in the number of sexual partners in males can contribute to a higher prevalence of sexually transmitted diseases in females
    Rodrigo Gouveia-Oliveira
    Center for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Building 208, 2800 Lyngby, Denmark
    J Theor Biol 261:100-6. 2009
  3. ncbi request reprint Genome update: DNA repeats in bacterial genomes
    David W Ussery
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, The Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    Microbiology 150:3519-21. 2004
  4. doi request reprint InterMap3D: predicting and visualizing co-evolving protein residues
    Rodrigo Gouveia-Oliveira
    Center for Biological Sequence Analysis, Technical University of Denmark, DK 2800 Lyngby, Denmark
    Bioinformatics 25:1963-5. 2009
  5. ncbi request reprint Comparative evaluation of word composition distances for the recognition of SCOP relationships
    Susana Vinga
    Biomathematics Group, ITQB, Universidade Nova de Lisboa, Rua da Quinta Grande, N 6, 2780 156 Oeiras, Portugal
    Bioinformatics 20:206-15. 2004
  6. ncbi request reprint Phylogenetic relationships between Sarcocystis species from reindeer and other Sarcocystidae deduced from ssu rRNA gene sequences
    Stina S Dahlgren
    Norwegian School of Veterinary Science, Department of Food Safety and Infection Biology, Section of Microbiology, Immunology and Parasitology, Oslo, Norway
    Vet Parasitol 151:27-35. 2008

Detail Information

Publications6

  1. pmc MaxAlign: maximizing usable data in an alignment
    Rodrigo Gouveia-Oliveira
    Center for Biological Sequence Analysis, Technical University of Denmark, Building 208, DK 2800 Lyngby, Denmark
    BMC Bioinformatics 8:312. 2007
    ..The presence of gaps in an alignment of nucleotide or protein sequences is often an inconvenience for bioinformatical studies. In phylogenetic and other analyses, for instance, gapped columns are often discarded entirely from the alignment...
  2. doi request reprint Higher variability in the number of sexual partners in males can contribute to a higher prevalence of sexually transmitted diseases in females
    Rodrigo Gouveia-Oliveira
    Center for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Building 208, 2800 Lyngby, Denmark
    J Theor Biol 261:100-6. 2009
    ..We suggest that this pattern may be caused by the effect described above in highly prevalent sexually transmitted diseases, while its impact in low-prevalence epidemics is surpassed by the action of high-risk individuals (mostly males)...
  3. ncbi request reprint Genome update: DNA repeats in bacterial genomes
    David W Ussery
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, The Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    Microbiology 150:3519-21. 2004
  4. doi request reprint InterMap3D: predicting and visualizing co-evolving protein residues
    Rodrigo Gouveia-Oliveira
    Center for Biological Sequence Analysis, Technical University of Denmark, DK 2800 Lyngby, Denmark
    Bioinformatics 25:1963-5. 2009
    ..Finally, InterMap3D generates high-quality images of the protein with the predicted co-evolving residues highlighted...
  5. ncbi request reprint Comparative evaluation of word composition distances for the recognition of SCOP relationships
    Susana Vinga
    Biomathematics Group, ITQB, Universidade Nova de Lisboa, Rua da Quinta Grande, N 6, 2780 156 Oeiras, Portugal
    Bioinformatics 20:206-15. 2004
    ....
  6. ncbi request reprint Phylogenetic relationships between Sarcocystis species from reindeer and other Sarcocystidae deduced from ssu rRNA gene sequences
    Stina S Dahlgren
    Norwegian School of Veterinary Science, Department of Food Safety and Infection Biology, Section of Microbiology, Immunology and Parasitology, Oslo, Norway
    Vet Parasitol 151:27-35. 2008
    ..This study suggests that phylogentic analysis can be a useful tool in the search for possible definitive hosts for those Sarcocystis species for which they are unknown and difficult to find solely by other methods...