Carsten Friis

Summary

Affiliation: Center for Biological Sequence Analysis
Country: Denmark

Publications

  1. pmc Genomic characterization of Campylobacter jejuni strain M1
    Carsten Friis
    Department of Systems Biology, The Technical University of Denmark, Lyngby, Denmark
    PLoS ONE 5:e12253. 2010
  2. pmc An environmental signature for 323 microbial genomes based on codon adaptation indices
    Hanni Willenbrock
    Center for Biological Sequence Analysis, BioCentrum DTU, The Technical University of Denmark, DK 2800 Lyngby, Denmark
    Genome Biol 7:R114. 2006
  3. pmc Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes
    Rolf S Kaas
    DTU Food, The Technical University of Denmark, Kgs Lyngby, Denmark
    BMC Genomics 13:577. 2012

Detail Information

Publications3

  1. pmc Genomic characterization of Campylobacter jejuni strain M1
    Carsten Friis
    Department of Systems Biology, The Technical University of Denmark, Lyngby, Denmark
    PLoS ONE 5:e12253. 2010
    ..Trees based on 16S rRNA sequences and on the total gene families in each genome are presented. The findings are discussed in the background of the proven virulence potential of M1...
  2. pmc An environmental signature for 323 microbial genomes based on codon adaptation indices
    Hanni Willenbrock
    Center for Biological Sequence Analysis, BioCentrum DTU, The Technical University of Denmark, DK 2800 Lyngby, Denmark
    Genome Biol 7:R114. 2006
    ..Here, we evaluate and compare two very different methods for estimating CAI values, one corresponding to translational codon usage bias and the second obtained mathematically by searching for the most dominant codon bias...
  3. pmc Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes
    Rolf S Kaas
    DTU Food, The Technical University of Denmark, Kgs Lyngby, Denmark
    BMC Genomics 13:577. 2012
    ..This knowledge will be useful for creating better phylogenies, for determination of molecular clocks and for improved typing techniques...