Massimo Andreatta

Summary

Affiliation: Center for Biological Sequence Analysis
Country: Denmark

Publications

  1. ncbi Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach
    Massimo Andreatta
    Center for Biological Sequence Analysis, Technical University of Denmark, DK 2800 Lyngby, Denmark
    Bioinformatics 29:8-14. 2013
  2. ncbi NNAlign: a web-based prediction method allowing non-expert end-user discovery of sequence motifs in quantitative peptide data
    Massimo Andreatta
    Center for Biological Sequence Analysis, Technical University of Denmark, Kongens Lyngby, Denmark
    PLoS ONE 6:e26781. 2011
  3. ncbi Characterizing the binding motifs of 11 common human HLA-DP and HLA-DQ molecules using NNAlign
    Massimo Andreatta
    Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark
    Immunology 136:306-11. 2012
  4. ncbi In silico prediction of human pathogenicity in the γ-proteobacteria
    Massimo Andreatta
    Center for Biological Sequence Analysis, Technical University of Denmark, Kongens Lyngby, Denmark
    PLoS ONE 5:e13680. 2010

Detail Information

Publications4

  1. ncbi Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach
    Massimo Andreatta
    Center for Biological Sequence Analysis, Technical University of Denmark, DK 2800 Lyngby, Denmark
    Bioinformatics 29:8-14. 2013
    ..Interpretation of such large peptide datasets, however, is a complex task, especially when the data contain multiple receptor binding motifs, and/or the motifs are found at different locations within distinct peptides...
  2. ncbi NNAlign: a web-based prediction method allowing non-expert end-user discovery of sequence motifs in quantitative peptide data
    Massimo Andreatta
    Center for Biological Sequence Analysis, Technical University of Denmark, Kongens Lyngby, Denmark
    PLoS ONE 6:e26781. 2011
    ..We have successfully applied this method to several different data sets including peptide microarray-derived sets containing more than 100,000 data points. NNAlign is available online at http://www.cbs.dtu.dk/services/NNAlign...
  3. ncbi Characterizing the binding motifs of 11 common human HLA-DP and HLA-DQ molecules using NNAlign
    Massimo Andreatta
    Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark
    Immunology 136:306-11. 2012
    ..Conversely, the binding motifs for DQ molecules appear more divergent, displaying unconventional anchor positions and in some cases rather unspecific amino acid preferences...
  4. ncbi In silico prediction of human pathogenicity in the γ-proteobacteria
    Massimo Andreatta
    Center for Biological Sequence Analysis, Technical University of Denmark, Kongens Lyngby, Denmark
    PLoS ONE 5:e13680. 2010
    ..Bioinformatics-based methods are therefore strongly needed to mine the fast growing number of genome sequences and assess in a rapid and reliable way the pathogenicity of novel bacteria...