David S DeLuca

Summary

Publications

  1. pmc RNA-SeQC: RNA-seq metrics for quality control and process optimization
    David S DeLuca
    Broad Institute of MIT and Harvard, Cambridge, MA, USA
    Bioinformatics 28:1530-2. 2012
  2. pmc PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments
    David S DeLuca
    Cancer Vaccine Center, Dana Farber Cancer Institute, 77 Avenue Louis Pasteur, Boston, MA 02115, USA
    BMC Bioinformatics 12:S6. 2011
  3. doi request reprint Comparative analysis of RNA sequencing methods for degraded or low-input samples
    Xian Adiconis
    Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA
    Nat Methods 10:623-9. 2013

Collaborators

  • Joshua Z Levin
  • Nathalie Pochet
  • Xian Adiconis
  • Diego Borges-Rivera
  • Andreas Gnirke
  • Aviv Regev
  • Aaron M Berlin
  • Timothy Fennell
  • Andrey Sivachenko
  • Michele A Busby
  • Rahul Satija
  • Dawn Anne Thompson
  • Alec Wysoker

Detail Information

Publications3

  1. pmc RNA-SeQC: RNA-seq metrics for quality control and process optimization
    David S DeLuca
    Broad Institute of MIT and Harvard, Cambridge, MA, USA
    Bioinformatics 28:1530-2. 2012
    ..Availability and implementation: See www.genepattern.org to run online, or www.broadinstitute.org/rna-seqc/ for a command line tool...
  2. pmc PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments
    David S DeLuca
    Cancer Vaccine Center, Dana Farber Cancer Institute, 77 Avenue Louis Pasteur, Boston, MA 02115, USA
    BMC Bioinformatics 12:S6. 2011
    ..This virulence factor is present in every influenza pandemic and major epidemic of the 20th century. Absence of PB1-F2 is associated with mild disease, such as the 2009 H1N1 ("swine flu")...
  3. doi request reprint Comparative analysis of RNA sequencing methods for degraded or low-input samples
    Xian Adiconis
    Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA
    Nat Methods 10:623-9. 2013
    ..SMART and NuGEN had distinct strengths for measuring low-quantity RNA. Our analysis allows biologists to select the most suitable methods and provides a benchmark for future method development. ..