David S DeLuca

Summary

Publications

  1. pmc RNA-SeQC: RNA-seq metrics for quality control and process optimization
    David S DeLuca
    Broad Institute of MIT and Harvard, Cambridge, MA, USA
    Bioinformatics 28:1530-2. 2012
  2. pmc PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments
    David S DeLuca
    Cancer Vaccine Center, Dana Farber Cancer Institute, 77 Avenue Louis Pasteur, Boston, MA 02115, USA
    BMC Bioinformatics 12:S6. 2011
  3. pmc MULTIPRED2: a computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles
    Guang Lan Zhang
    Cancer Vaccine Center, Dana Farber Cancer Institute, Harvard Medical School, Boston, MA, USA
    J Immunol Methods 374:53-61. 2011
  4. pmc Comparative analysis of RNA sequencing methods for degraded or low-input samples
    Xian Adiconis
    Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA
    Nat Methods 10:623-9. 2013
  5. pmc Mutated BCR-ABL generates immunogenic T-cell epitopes in CML patients
    Ann Cai
    Harvard MIT Division of Health Sciences and Technology, Harvard Medical School, Boston, Massachusetts, USA
    Clin Cancer Res 18:5761-72. 2012
  6. doi request reprint Data processing and analysis for protein microarrays
    David S DeLuca
    Cancer Vaccine Center, Department of Medical Oncology, Dana Farber Cancer Institute, Boston, MA, USA
    Methods Mol Biol 723:337-47. 2011
  7. doi request reprint Database resources for proteomics-based analysis of cancer
    Guang Lan Zhang
    Cancer Vaccine Center, Department of Medical Oncology, Dana Farber Cancer Institute, Harvard Medical School, Boston, MA, USA
    Methods Mol Biol 723:349-64. 2011
  8. pmc SF3B1 and other novel cancer genes in chronic lymphocytic leukemia
    Lili Wang
    Cancer Vaccine Center and the Department of Medical Oncology, Dana Farber Cancer Institute, Boston, MA 02115, USA
    N Engl J Med 365:2497-506. 2011

Collaborators

Detail Information

Publications8

  1. pmc RNA-SeQC: RNA-seq metrics for quality control and process optimization
    David S DeLuca
    Broad Institute of MIT and Harvard, Cambridge, MA, USA
    Bioinformatics 28:1530-2. 2012
    ..Availability and implementation: See www.genepattern.org to run online, or www.broadinstitute.org/rna-seqc/ for a command line tool...
  2. pmc PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments
    David S DeLuca
    Cancer Vaccine Center, Dana Farber Cancer Institute, 77 Avenue Louis Pasteur, Boston, MA 02115, USA
    BMC Bioinformatics 12:S6. 2011
    ..This virulence factor is present in every influenza pandemic and major epidemic of the 20th century. Absence of PB1-F2 is associated with mild disease, such as the 2009 H1N1 ("swine flu")...
  3. pmc MULTIPRED2: a computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles
    Guang Lan Zhang
    Cancer Vaccine Center, Dana Farber Cancer Institute, Harvard Medical School, Boston, MA, USA
    J Immunol Methods 374:53-61. 2011
    ..MULTIPRED2 is an important tool to complement wet-lab experimental methods for identification of T-cell epitopes. It is available at http://cvc.dfci.harvard.edu/multipred2/...
  4. pmc Comparative analysis of RNA sequencing methods for degraded or low-input samples
    Xian Adiconis
    Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA
    Nat Methods 10:623-9. 2013
    ..SMART and NuGEN had distinct strengths for measuring low-quantity RNA. Our analysis allows biologists to select the most suitable methods and provides a benchmark for future method development. ..
  5. pmc Mutated BCR-ABL generates immunogenic T-cell epitopes in CML patients
    Ann Cai
    Harvard MIT Division of Health Sciences and Technology, Harvard Medical School, Boston, Massachusetts, USA
    Clin Cancer Res 18:5761-72. 2012
    ..Characterization of an approach to identify leukemia neoantigens arising in the context of drug resistance...
  6. doi request reprint Data processing and analysis for protein microarrays
    David S DeLuca
    Cancer Vaccine Center, Department of Medical Oncology, Dana Farber Cancer Institute, Boston, MA, USA
    Methods Mol Biol 723:337-47. 2011
    ..We conclude with a discussion of fundamental and practical issues and considerations...
  7. doi request reprint Database resources for proteomics-based analysis of cancer
    Guang Lan Zhang
    Cancer Vaccine Center, Department of Medical Oncology, Dana Farber Cancer Institute, Harvard Medical School, Boston, MA, USA
    Methods Mol Biol 723:349-64. 2011
    ..Automated information retrieval from these databases enables efficient large-scale proteomics data analysis...
  8. pmc SF3B1 and other novel cancer genes in chronic lymphocytic leukemia
    Lili Wang
    Cancer Vaccine Center and the Department of Medical Oncology, Dana Farber Cancer Institute, Boston, MA 02115, USA
    N Engl J Med 365:2497-506. 2011
    ..The somatic genetic basis of chronic lymphocytic leukemia, a common and clinically heterogeneous leukemia occurring in adults, remains poorly understood...