Richard Stefl

Summary

Affiliation: Masaryk University
Country: Czech Republic

Publications

  1. pmc Recognition of transcription termination signal by the nuclear polyadenylated RNA-binding (NAB) 3 protein
    Fruzsina Hobor
    National Centre for Biomolecular Research, Central European Institute of Technology, Faculty of Science, Masaryk University, Brno CZ 62500, Czechia
    J Biol Chem 286:3645-57. 2011
  2. doi request reprint 1H, 13C, and 15N chemical shift assignments for the RNA recognition motif of Nab3
    Roberto Pergoli
    National Centre for Biomolecular Research, Faculty of Science, Masaryk University, 62500 Brno, Czechia
    Biomol NMR Assign 4:119-21. 2010
  3. doi request reprint 1H, 13C, and 15N resonance assignments for the CTD-interacting domain of Nrd1 bound to Ser5-phosphorylated CTD of RNA polymerase II
    Karel Kubicek
    National Centre for Biomolecular Research, Central European Institute of Technology, Faculty of Science, Masaryk University, 62500, Brno, Czech Republic
    Biomol NMR Assign 5:203-5. 2011
  4. pmc 1H, 13C, and 15N chemical shift assignments of ZCCHC9
    Maria Sanudo
    National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, Czechia
    Biomol NMR Assign 5:19-21. 2011
  5. pmc Structure and semi-sequence-specific RNA binding of Nrd1
    Veronika Bacikova
    CEITEC Central European Institute of Technology, Masaryk University, Brno 62500, Czech Republic National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno 62500, Czech Republic
    Nucleic Acids Res 42:8024-38. 2014
  6. pmc DNA A-tract bending in three dimensions: solving the dA4T4 vs. dT4A4 conundrum
    Richard Stefl
    National Center for Biomolecular Research, NMR Laboratory, Faculty of Science, Masaryk University, Kotlarska 2, CZ 611 37 Brno, Czech Republic
    Proc Natl Acad Sci U S A 101:1177-82. 2004
  7. pmc Molecular dynamics simulations of Guanine quadruplex loops: advances and force field limitations
    Eva Fadrná
    National Centre for Biomolecular Research, Faculty of Science, Masaryk University, 611 37 Brno, Czech Republic
    Biophys J 87:227-42. 2004

Collaborators

Detail Information

Publications7

  1. pmc Recognition of transcription termination signal by the nuclear polyadenylated RNA-binding (NAB) 3 protein
    Fruzsina Hobor
    National Centre for Biomolecular Research, Central European Institute of Technology, Faculty of Science, Masaryk University, Brno CZ 62500, Czechia
    J Biol Chem 286:3645-57. 2011
    ..These findings are in accordance with the model of their function in the poly(A) independent termination, in which binding to the combined and/or repetitive termination elements elicits efficient termination...
  2. doi request reprint 1H, 13C, and 15N chemical shift assignments for the RNA recognition motif of Nab3
    Roberto Pergoli
    National Centre for Biomolecular Research, Faculty of Science, Masaryk University, 62500 Brno, Czechia
    Biomol NMR Assign 4:119-21. 2010
    ..The assignment will allow performing NMR structural and RNA-binding studies of Nab3 with the aim to investigate its role in the poly(A) independent termination pathway...
  3. doi request reprint 1H, 13C, and 15N resonance assignments for the CTD-interacting domain of Nrd1 bound to Ser5-phosphorylated CTD of RNA polymerase II
    Karel Kubicek
    National Centre for Biomolecular Research, Central European Institute of Technology, Faculty of Science, Masaryk University, 62500, Brno, Czech Republic
    Biomol NMR Assign 5:203-5. 2011
    ..The presented assignment of backbone and side-chain resonances of the Nrd1 CID proton, carbon and nitrogen nuclei will allow studies of the structure and interaction of CID with carboxy-terminal domain (CTD) of the RNA polymerase II...
  4. pmc 1H, 13C, and 15N chemical shift assignments of ZCCHC9
    Maria Sanudo
    National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, Czechia
    Biomol NMR Assign 5:19-21. 2011
    ..Here, we report the NMR spectral assignment of the zinc knuckle region of ZCCHC9. These data will allow performing NMR structural and RNA-binding studies of ZCCHC9 with the aim to investigate its role in the RNA quality control in human...
  5. pmc Structure and semi-sequence-specific RNA binding of Nrd1
    Veronika Bacikova
    CEITEC Central European Institute of Technology, Masaryk University, Brno 62500, Czech Republic National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno 62500, Czech Republic
    Nucleic Acids Res 42:8024-38. 2014
    ..Our findings have implication for the role of Nrd1 in termination and processing of many non-coding RNAs arising from bidirectional pervasive transcription. ..
  6. pmc DNA A-tract bending in three dimensions: solving the dA4T4 vs. dT4A4 conundrum
    Richard Stefl
    National Center for Biomolecular Research, NMR Laboratory, Faculty of Science, Masaryk University, Kotlarska 2, CZ 611 37 Brno, Czech Republic
    Proc Natl Acad Sci U S A 101:1177-82. 2004
    ..Results of gel electrophoretic mobility studies are consistent with the higher-order structure of the DNA and furthermore depend on the nature of the monovalent cation present in the running buffer...
  7. pmc Molecular dynamics simulations of Guanine quadruplex loops: advances and force field limitations
    Eva Fadrná
    National Centre for Biomolecular Research, Faculty of Science, Masaryk University, 611 37 Brno, Czech Republic
    Biophys J 87:227-42. 2004
    ..The optimal diagonal and lateral loop arrangements appear to be close in energy although a proper inclusion of the loop monovalent cations could stabilize the diagonal architecture...