Affiliation: Medical School
- Comparison of codon usage measures and their applicability in prediction of microbial gene expressivityFran Supek
Division of Biology, Department of Molecular Biology, Faculty of Science, Zagreb University, Rooseveltov trg 6, 10000 Zagreb, Croatia
BMC Bioinformatics 6:182. 2005..One of the common applications of codon usage analyses is to quantitatively predict gene expressivity...
- INCA: synonymous codon usage analysis and clustering by means of self-organizing mapFran Supek
Department of Molecular Biology, Division of Biology, Faculty of Science, Zagreb University, Rooseveltov trg 6, 10000 Zagreb, Croatia
Bioinformatics 20:2329-30. 2004..Finally, INCA includes a specific unsupervised neural network algorithm, the self-organizing map, used for gene clustering according to the preferred utilization of codons...
- On relevance of codon usage to expression of synthetic and natural genes in Escherichia coliFran Supek
Division of Electronics, Rudjer Boskovic Institute, 10000 Zagreb, Croatia
Genetics 185:1129-34. 2010..Natural E. coli genes had weaker 5' mRNA structures than the examined set of GFP variants and did not exhibit a correlation between the folding free energy of 5' mRNA structures and protein expression...
- Enhanced analytical power of SDS-PAGE using machine learning algorithmsFran Supek
Laboratory for Information Systems, Division of Electronics, Rudjer Boskovic Institute, Bijenicka cesta 54, Zagreb, Croatia
Proteomics 8:28-31. 2008....