Jean Michel Claverie

Summary

Publications

  1. ncbi request reprint Open questions about giant viruses
    Jean Michel Claverie
    Aix Marseille Universite, CNRS, IGS UMR 7256, Marseille, France
    Adv Virus Res 85:25-56. 2013
  2. pmc The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite
    Hiroyuki Ogata
    Structural and Genomic Information Laboratory, UPR 2589, IBSM, CNRS, Marseille Cedex, France
    PLoS Biol 3:e248. 2005
  3. pmc Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens
    Hiroyuki Ogata
    Structural and Genomic Information Laboratory, Centre National de la Recherche Scientifique UPR 2589, Institut de Biologie Structurale et Microbiologie, Parc Scientifique de Luminy, Marseille, France
    PLoS Genet 2:e76. 2006
  4. ncbi request reprint Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology
    Matthieu Legendre
    Structural and Genomic Information Laboratory, Unité Mixte de Recherche 7256 Institut de Microbiologie de la Méditerranée Centre National de la Recherche Scientifique, Aix Marseille Universite, 13288 Marseille Cedex 9, France
    Proc Natl Acad Sci U S A 111:4274-9. 2014
  5. ncbi request reprint Genome-based design of a cell-free culture medium for Tropheryma whipplei
    Patricia Renesto
    Unite des Rickettsies, CNRS UMR 6020, Faculte de Medecine, 27 Boulevard Jean Moulin, 13385, Marseille, France
    Lancet 362:447-9. 2003
  6. pmc Reductive genome evolution from the mother of Rickettsia
    Guillaume Blanc
    Structural and Genomic Information Laboratory, Institut de Biologie Structurale et Microbiologie, Parc Scientifique de Luminy, Marseille, France
    PLoS Genet 3:e14. 2007
  7. pmc Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes
    Sébastien Santini
    Structural and Genomic Information Laboratory, Unité Mixte de Recherche 7256, Centre National de la Recherche Scientifique, Aix Marseille Universite, 13288 Marseille Cedex 9, France
    Proc Natl Acad Sci U S A 110:10800-5. 2013
  8. pmc The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation
    Guillaume Blanc
    Structural and Genomic Information Laboratory, UMR7256 CNRS, Aix Marseille University, Mediterranean Institute of Microbiology FR3479, Marseille, FR 13385, France
    Genome Biol 13:R39. 2012
  9. pmc Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses
    Adrien Jeanniard
    Information Génomique and Structurale, IGS UMR7256, CNRS, Aix Marseille Universite, FR 13288, Marseille, France
    BMC Genomics 14:158. 2013
  10. pmc Comparative genomics of multidrug resistance in Acinetobacter baumannii
    Pierre Edouard Fournier
    Information Genomique et Structurale, Institute for Structural Biology and Microbiology, IBSM, Marseille, France
    PLoS Genet 2:e7. 2006

Detail Information

Publications26

  1. ncbi request reprint Open questions about giant viruses
    Jean Michel Claverie
    Aix Marseille Universite, CNRS, IGS UMR 7256, Marseille, France
    Adv Virus Res 85:25-56. 2013
    ....
  2. pmc The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite
    Hiroyuki Ogata
    Structural and Genomic Information Laboratory, UPR 2589, IBSM, CNRS, Marseille Cedex, France
    PLoS Biol 3:e248. 2005
    ..Our study demonstrates that complete genome sequencing is the fastest approach to reveal phenotypic characters of recently cultured obligate intracellular bacteria...
  3. pmc Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens
    Hiroyuki Ogata
    Structural and Genomic Information Laboratory, Centre National de la Recherche Scientifique UPR 2589, Institut de Biologie Structurale et Microbiologie, Parc Scientifique de Luminy, Marseille, France
    PLoS Genet 2:e76. 2006
    ....
  4. ncbi request reprint Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology
    Matthieu Legendre
    Structural and Genomic Information Laboratory, Unité Mixte de Recherche 7256 Institut de Microbiologie de la Méditerranée Centre National de la Recherche Scientifique, Aix Marseille Universite, 13288 Marseille Cedex 9, France
    Proc Natl Acad Sci U S A 111:4274-9. 2014
    ....
  5. ncbi request reprint Genome-based design of a cell-free culture medium for Tropheryma whipplei
    Patricia Renesto
    Unite des Rickettsies, CNRS UMR 6020, Faculte de Medecine, 27 Boulevard Jean Moulin, 13385, Marseille, France
    Lancet 362:447-9. 2003
    ..Genomic information can, therefore, provide sufficient clues for designing axenic media for fastidious and uncultured pathogens...
  6. pmc Reductive genome evolution from the mother of Rickettsia
    Guillaume Blanc
    Structural and Genomic Information Laboratory, Institut de Biologie Structurale et Microbiologie, Parc Scientifique de Luminy, Marseille, France
    PLoS Genet 3:e14. 2007
    ....
  7. pmc Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes
    Sébastien Santini
    Structural and Genomic Information Laboratory, Unité Mixte de Recherche 7256, Centre National de la Recherche Scientifique, Aix Marseille Universite, 13288 Marseille Cedex 9, France
    Proc Natl Acad Sci U S A 110:10800-5. 2013
    ....
  8. pmc The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation
    Guillaume Blanc
    Structural and Genomic Information Laboratory, UMR7256 CNRS, Aix Marseille University, Mediterranean Institute of Microbiology FR3479, Marseille, FR 13385, France
    Genome Biol 13:R39. 2012
    ..This is the first eukaryotic microorganism from a polar environment to have its genome sequenced...
  9. pmc Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses
    Adrien Jeanniard
    Information Génomique and Structurale, IGS UMR7256, CNRS, Aix Marseille Universite, FR 13288, Marseille, France
    BMC Genomics 14:158. 2013
    ..These new data allowed us to analyze the genomic landscape of 41 chloroviruses, which revealed some remarkable features about these viruses...
  10. pmc Comparative genomics of multidrug resistance in Acinetobacter baumannii
    Pierre Edouard Fournier
    Information Genomique et Structurale, Institute for Structural Biology and Microbiology, IBSM, Marseille, France
    PLoS Genet 2:e7. 2006
    ..Whole-genome sequencing appears to be a fast and efficient approach to the exhaustive identification of resistance genes in epidemic infectious agents of clinical significance...
  11. pmc Two new subfamilies of DNA mismatch repair proteins (MutS) specifically abundant in the marine environment
    Hiroyuki Ogata
    Information Genomique et Structurale, CNRS UPR2589, Institut de Microbiologie de la Mediterranee, Parc Scientifique de Luminy, Aix Marseille Universite, Marseille Cedex 9, France
    ISME J 5:1143-51. 2011
    ..Giruses thus seem to represent a major source of the underexplored diversity of the MutS family in the microbial world...
  12. pmc The conserved Candida albicans CA3427 gene product defines a new family of proteins exhibiting the generic periplasmic binding protein structural fold
    Sébastien Santini
    Information Génomique et Structurale CNRS UPR2589, Aix Marseille Universite, Mediterranean Institute of Microbiology, Parc Scientifique de Luminy, Marseille, France
    PLoS ONE 6:e18528. 2011
    ..It was then lost by the Saccharomycetales which include Saccharomyces cerevisiae...
  13. ncbi request reprint Crystal structure of Escherichia coli DkgA, a broad-specificity aldo-keto reductase
    Sandra Jeudy
    Information Genomique et Structurale, CNRS, Marseille, France
    Proteins 62:302-7. 2006
  14. pmc BLAST-EXPLORER helps you building datasets for phylogenetic analysis
    Alexis Dereeper
    Information Génomique and Structurale CNRS UPR2589, Institut de Microbiologie de la Méditerranée IFR 88, Marseille, France
    BMC Evol Biol 10:8. 2010
    ....
  15. doi request reprint Mimivirus and Mimiviridae: giant viruses with an increasing number of potential hosts, including corals and sponges
    Jean Michel Claverie
    Structural and Genomic Information Laboratory, CNRS UPR 2589, IFR 88, Parc Scientifique de Luminy, Case 934, Marseille, France
    J Invertebr Pathol 101:172-80. 2009
    ....
  16. ncbi request reprint The insertion of palindromic repeats in the evolution of proteins
    Jean Michel Claverie
    Information Genetique et Structurale, CNRS AVENTIS UMR 1889, Institut de Biologie Structurale et Microbiologie, Marseille, France
    Trends Biochem Sci 28:75-80. 2003
    ..Based on previous results and theories on the coding potential of palindromic elements, we speculate that their insertion and mobility might have played a significant role in the early stages of protein evolution...
  17. pmc Translation in giant viruses: a unique mixture of bacterial and eukaryotic termination schemes
    Sandra Jeudy
    CNRS, Aix Marseille Universite, IGS UMR7256, Marseille, France
    PLoS Genet 8:e1003122. 2012
    ..Lastly, the perplexing occurrence of a bacterial-like regulatory mechanism in a eukaryotic/archaeal homologous gene is yet another oddity brought about by the study of giant viruses...
  18. pmc Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
    Pascal Hingamp
    CNRS, Aix Marseille Universite, Laboratoire Information Génomique et Structurale UMR 7256, Mediterranean Institute of Microbiology FR 3479, Marseille, France
    ISME J 7:1678-95. 2013
    ....
  19. ncbi request reprint Genomic correlates of hyperthermostability, an update
    Karsten Suhre
    Structural and Genomic Information Laboratory, UPR 2589 CNRS, Institute of Structural Biology and Microbiology, CNRS, Marseille, France
    J Biol Chem 278:17198-202. 2003
    ..and Suzuki, M. (2000) Proc. Natl. Acad. Sci. 97, 14257-14262). We show that the CvP-bias is the sole criterion that is able to clearly discriminate hyperthermophile from mesothermophile microorganisms on a global genomic basis...
  20. pmc Giant viruses in the oceans: the 4th Algal Virus Workshop
    Jean Michel Claverie
    Structural and Genomic Information Laboratory, UPR 2589, IBSM, CNRS, 31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20, France
    Virol J 2:52. 2005
    ....
  21. pmc Tentative mapping of transcription-induced interchromosomal interaction using chimeric EST and mRNA data
    Per Unneberg
    Structural and Genomic Information Laboratory, Centre National de la Recherche Scientifique CNRS UPR 2589, Institut de Biologie Structurale et Microbiologie, Marseille, France
    PLoS ONE 2:e254. 2007
    ..Due to their higher quality, the mRNA findings are of particular interest and we hope that they may serve as food for thought for specialists in diverse areas of molecular biology...
  22. pmc The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex
    Guillaume Blanc
    Centre National de la Recherche Scientifique, Laboratoire Information Génomique et Structurale UPR2589, Aix Marseille Universite, Institut de Microbiologie de la Mediterranee, 13009 Marseille, France
    Plant Cell 22:2943-55. 2010
    ..Analysis of the NC64A genome substantially advances our understanding of the green lineage evolution, including the genomic interplay with viruses and symbiosis between eukaryotes...
  23. pmc Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing
    Matthieu Legendre
    Structural and genomic Information Laboratory CNRS, UPR2589, Mediterranean Institute of Microbiology, Aix Marseille Universite, 163 Avenue de Luminy, Case 934, FR 13288 Marseille, France
    Virol J 8:99. 2011
    ..Its 1.2 Mb-genome was initially predicted to encode 917 genes. A subsequent RNA-Seq analysis precisely mapped many transcript boundaries and identified 75 new genes...
  24. pmc Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus
    Adam Monier
    Structural and Genomic Information Laboratory, CNRS UPR2589, Mediterranean Institute of Microbiology IFR 88, Universite de la Mediterranee, Parc Scientifique de Luminy, Marseille, France
    Genome Res 19:1441-9. 2009
    ....
  25. pmc Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria
    Stephane Audic
    Structural and Genomic Information Laboratory, Institute for Structural Biology and Microbiology, Marseille, France
    PLoS Genet 3:e138. 2007
    ..The M. massiliensis genome analyses strongly suggest that water-living bacteria are a common source for genes involved in heavy-metal resistance, antibiotics resistance, and virulence factors...