Xi Wang

Summary

Affiliation: Tsinghua University
Location: Beijing, China
URL: http://bioinfo.au.tsinghua.edu.cn/member/xwang/

Publications

  1. ncbi request reprint Prediction of transcription start sites based on feature selection using AMOSA
    Xi Wang
    Bioinformatics Division, TNLIST and Department of Automation, Tsinghua Univ, Beijing 100084, China
    Comput Syst Bioinformatics Conf 6:183-93. 2007
  2. doi request reprint Predicting the fate of microRNA target genes based on sequence features
    Yunfei Pei
    MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST Department of Automation, Tsinghua University, Beijing 100084, China
    J Theor Biol 261:17-22. 2009
  3. doi request reprint DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
    Likun Wang
    MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST Department of Automation, Tsinghua, University, Beijing 100084, China
    Bioinformatics 26:136-8. 2010
  4. ncbi request reprint Isoform abundance inference provides a more accurate estimation of gene expression levels in RNA-seq
    Xi Wang
    MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST Department of Automation, Tsinghua University, Beijing, P R China
    J Bioinform Comput Biol 8:177-92. 2010
  5. doi request reprint Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq
    Zhengpeng Wu
    TNLIST Department of Automation, Tsinghua University, Beijing 100084, China
    Bioinformatics 27:502-8. 2011
  6. pmc Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite
    Xi Wang
    MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST Department of Automation, Tsinghua University, Beijing 100084, China
    BMC Syst Biol 5:S3. 2011

Collaborators

Detail Information

Publications6

  1. ncbi request reprint Prediction of transcription start sites based on feature selection using AMOSA
    Xi Wang
    Bioinformatics Division, TNLIST and Department of Automation, Tsinghua Univ, Beijing 100084, China
    Comput Syst Bioinformatics Conf 6:183-93. 2007
    ..This system is found to be comparable to, often better than, several existing methods in terms of different quantitative performance measures...
  2. doi request reprint Predicting the fate of microRNA target genes based on sequence features
    Yunfei Pei
    MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST Department of Automation, Tsinghua University, Beijing 100084, China
    J Theor Biol 261:17-22. 2009
    ..Further analysis shows that four out of the five studied miRNAs probably share similar regulatory mechanisms on their target genes...
  3. doi request reprint DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
    Likun Wang
    MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST Department of Automation, Tsinghua, University, Beijing 100084, China
    Bioinformatics 26:136-8. 2010
    ..AVAILABILITY: The R package and a quick-start vignette is available at http://bioinfo.au.tsinghua.edu.cn/software/degseq..
  4. ncbi request reprint Isoform abundance inference provides a more accurate estimation of gene expression levels in RNA-seq
    Xi Wang
    MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST Department of Automation, Tsinghua University, Beijing, P R China
    J Bioinform Comput Biol 8:177-92. 2010
    ....
  5. doi request reprint Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq
    Zhengpeng Wu
    TNLIST Department of Automation, Tsinghua University, Beijing 100084, China
    Bioinformatics 27:502-8. 2011
    ..Modification of the model is needed when considering situations where RNA-Seq data do not follow uniform distribution...
  6. pmc Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite
    Xi Wang
    MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST Department of Automation, Tsinghua University, Beijing 100084, China
    BMC Syst Biol 5:S3. 2011
    ..It is still challenging to pinpoint TFBSs directly from ChIP-seq data, especially in regions with closely spaced binding events...