Kun Sun

Summary

Affiliation: The Chinese University of Hong Kong
Country: China

Publications

  1. pmc iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data
    Kun Sun
    Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China
    BMC Genomics 14:S7. 2013
  2. pmc Genome-wide survey by ChIP-seq reveals YY1 regulation of lincRNAs in skeletal myogenesis
    Leina Lu
    Department of Chemical Pathology, Li Ka Shing Institute of Health Sciences, Prince of Wales Hospital, The Chinese University of Hong Kong, Hong Kong, China
    EMBO J 32:2575-88. 2013
  3. pmc YY1TargetDB: an integral information resource for Yin Yang 1 target loci
    Andy M Guo
    Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China
    Database (Oxford) 2013:bat007. 2013
  4. pmc Sebnif: an integrated bioinformatics pipeline for the identification of novel large intergenic noncoding RNAs (lincRNAs)--application in human skeletal muscle cells
    Kun Sun
    Department of Chemical Pathology, Li Ka Shing Institute of Health Sciences, Prince of Wales Hospital, The Chinese University of Hong Kong, Hong Kong SAR, China
    PLoS ONE 9:e84500. 2014
  5. pmc A Novel YY1-miR-1 regulatory circuit in skeletal myogenesis revealed by genome-wide prediction of YY1-miRNA network
    Leina Lu
    Department of Chemical Pathology, Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Hong Kong, China
    PLoS ONE 7:e27596. 2012
  6. pmc Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing
    K C Allen Chan
    Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, China
    Proc Natl Acad Sci U S A 110:18761-8. 2013

Collaborators

  • Hao Sun
  • Huating Wang
  • Leina Lu
  • K C Allen Chan
  • Andy M Guo
  • Xiaoxi Su
  • Peiyong Jiang
  • Lijun Wang
  • Liang Zhou
  • David S C Hui
  • Y M Dennis Lo
  • Brigette B Y Ma
  • Wing Cheong Chan
  • Henry L Y Chan
  • Anthony T C Chan
  • Stephen L Chan
  • Carol W M Chan
  • Edwin P Hui
  • John Wong
  • Yu Zhao
  • Paul B S Lai
  • Simon S M Ng
  • Xiaona Chen
  • Rossa W K Chiu
  • Cesar S C Wong
  • Eric Z Chen

Detail Information

Publications6

  1. pmc iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data
    Kun Sun
    Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China
    BMC Genomics 14:S7. 2013
    ..However, the identification of lincRNAs from thousands of assembled transcripts is still challenging due to the difficulties of separating them from protein coding transcripts (PCTs)...
  2. pmc Genome-wide survey by ChIP-seq reveals YY1 regulation of lincRNAs in skeletal myogenesis
    Leina Lu
    Department of Chemical Pathology, Li Ka Shing Institute of Health Sciences, Prince of Wales Hospital, The Chinese University of Hong Kong, Hong Kong, China
    EMBO J 32:2575-88. 2013
    ..Our findings not only provide the first genome-wide picture of YY1 association in muscle cells, but also uncover the functional role of lincRNA Yam-1. ..
  3. pmc YY1TargetDB: an integral information resource for Yin Yang 1 target loci
    Andy M Guo
    Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China
    Database (Oxford) 2013:bat007. 2013
    ..Database URL: http://www.myogenesisdb.org/YY1TargetDB...
  4. pmc Sebnif: an integrated bioinformatics pipeline for the identification of novel large intergenic noncoding RNAs (lincRNAs)--application in human skeletal muscle cells
    Kun Sun
    Department of Chemical Pathology, Li Ka Shing Institute of Health Sciences, Prince of Wales Hospital, The Chinese University of Hong Kong, Hong Kong SAR, China
    PLoS ONE 9:e84500. 2014
    ..Sebnif is available at http://sunlab.lihs.cuhk.edu.hk/sebnif/. ..
  5. pmc A Novel YY1-miR-1 regulatory circuit in skeletal myogenesis revealed by genome-wide prediction of YY1-miRNA network
    Leina Lu
    Department of Chemical Pathology, Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Hong Kong, China
    PLoS ONE 7:e27596. 2012
    ..Together, these results identify a novel regulatory circuit required for skeletal myogenesis and reinforce the idea that regulatory circuitries involving miRNAs and TFs are prevalent mechanisms...
  6. pmc Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing
    K C Allen Chan
    Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, China
    Proc Natl Acad Sci U S A 110:18761-8. 2013
    ..These developments have thus expanded the applications of plasma DNA analysis for cancer detection and monitoring. ..