Xiao Fei Zhang

Summary

Affiliation: Sun Yat-sen University
Country: China

Publications

  1. doi request reprint Protein complexes discovery based on protein-protein interaction data via a regularized sparse generative network model
    Xiao Fei Zhang
    Center for Computer Vision and Department of Mathematics, Sun Yat Sen University, Guangzhou 510275, China
    IEEE/ACM Trans Comput Biol Bioinform 9:857-70. 2012
  2. ncbi request reprint Biomarker identification and cancer classification based on microarray data using Laplace naive Bayes model with mean shrinkage
    Meng Yun Wu
    Center for Computer Vision and Department of Mathematics, Sun Yat Sen University, Guangzhou 510275, China
    IEEE/ACM Trans Comput Biol Bioinform 9:1649-62. 2012
  3. doi request reprint Structured sparse error coding for face recognition with occlusion
    Xiao Xin Li
    Center for Computer Vision and Department of Mathematics, Sun Yat Sen University, Guangzhou 510275, China
    IEEE Trans Image Process 22:1889-900. 2013
  4. pmc Exploring overlapping functional units with various structure in protein interaction networks
    Xiao Fei Zhang
    Center for Computer Vision and Department of Mathematics, Sun Yat Sen University, Guangzhou, China
    PLoS ONE 7:e43092. 2012
  5. doi request reprint A framework for incorporating functional interrelationships into protein function prediction algorithms
    Xiao Fei Zhang
    Center for Computer Vision and Department of Mathematics, Sun Yat Sen University, Guangzhou 510275, China
    IEEE/ACM Trans Comput Biol Bioinform 9:740-53. 2012
  6. pmc Cancer subtype discovery and biomarker identification via a new robust network clustering algorithm
    Meng Yun Wu
    Center for Computer Vision and Department of Mathematics, Sun Yat Sen University, Guangzhou, China
    PLoS ONE 8:e66256. 2013
  7. pmc Protein complex detection via weighted ensemble clustering based on Bayesian nonnegative matrix factorization
    Le Ou-Yang
    Center for Computer Vision and Department of Mathematics, Sun Yat Sen University, Guangzhou, China
    PLoS ONE 8:e62158. 2013

Collaborators

Detail Information

Publications7

  1. doi request reprint Protein complexes discovery based on protein-protein interaction data via a regularized sparse generative network model
    Xiao Fei Zhang
    Center for Computer Vision and Department of Mathematics, Sun Yat Sen University, Guangzhou 510275, China
    IEEE/ACM Trans Comput Biol Bioinform 9:857-70. 2012
    ..In addition, RSGNM is able to detect overlapping complexes and complexes including peripheral proteins simultaneously. These results give new insights about the importance of generative network models in protein complexes identification...
  2. ncbi request reprint Biomarker identification and cancer classification based on microarray data using Laplace naive Bayes model with mean shrinkage
    Meng Yun Wu
    Center for Computer Vision and Department of Mathematics, Sun Yat Sen University, Guangzhou 510275, China
    IEEE/ACM Trans Comput Biol Bioinform 9:1649-62. 2012
    ..The analysis of biological and functional correlation of the genes based on Gene Ontology (GO) terms shows that the proposed method guarantees the selection of highly correlated genes simultaneously..
  3. doi request reprint Structured sparse error coding for face recognition with occlusion
    Xiao Xin Li
    Center for Computer Vision and Department of Mathematics, Sun Yat Sen University, Guangzhou 510275, China
    IEEE Trans Image Process 22:1889-900. 2013
    ....
  4. pmc Exploring overlapping functional units with various structure in protein interaction networks
    Xiao Fei Zhang
    Center for Computer Vision and Department of Mathematics, Sun Yat Sen University, Guangzhou, China
    PLoS ONE 7:e43092. 2012
    ..Moreover, RSRGM has the ability to discover biological significant functional units besides complexes...
  5. doi request reprint A framework for incorporating functional interrelationships into protein function prediction algorithms
    Xiao Fei Zhang
    Center for Computer Vision and Department of Mathematics, Sun Yat Sen University, Guangzhou 510275, China
    IEEE/ACM Trans Comput Biol Bioinform 9:740-53. 2012
    ..Finally, we show that our method is robust to annotations in the database which are not complete at present. These results give new insights about the importance of functional interrelationships in protein function prediction...
  6. pmc Cancer subtype discovery and biomarker identification via a new robust network clustering algorithm
    Meng Yun Wu
    Center for Computer Vision and Department of Mathematics, Sun Yat Sen University, Guangzhou, China
    PLoS ONE 8:e66256. 2013
    ..Moveover, PMT-UC has the ability to select cancer related biomarkers which have been verified in biochemical or biomedical research and learn the biological significant correlation among genes. ..
  7. pmc Protein complex detection via weighted ensemble clustering based on Bayesian nonnegative matrix factorization
    Le Ou-Yang
    Center for Computer Vision and Department of Mathematics, Sun Yat Sen University, Guangzhou, China
    PLoS ONE 8:e62158. 2013
    ..Furthermore, EC-BNMF has a high degree of flexibility in the choice of base clustering results. It can be coupled with existing clustering methods to identify protein complexes...