Shiheng Tao

Summary

Affiliation: Northwest A and F University
Country: China

Publications

  1. pmc A comparison and evaluation of five biclustering algorithms by quantifying goodness of biclusters for gene expression data
    Li Li
    State Key Laboratory of Crop Stress Biology in Arid Areas and College of Sciences, Northwest A and F University, Yangling, Shaanxi, 712100, China
    BioData Min 5:8. 2012
  2. pmc Impacts of mutation effects and population size on mutation rate in asexual populations: a simulation study
    Xiaoqian Jiang
    Bioinformatics Center, Northwest A and F University, Yangling, Shaanxi 712100, China
    BMC Evol Biol 10:298. 2010
  3. pmc Statistical distributions of optimal global alignment scores of random protein sequences
    Hongxia Pang
    School of Life Science, Northwest A and F University, Yangling, Shaanxi, China
    BMC Bioinformatics 6:257. 2005
  4. pmc Number variation of high stability regions is correlated with gene functions
    Yuanhui Mao
    College of life Sciences and State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A and F University, Yangling, Shaanxi, China
    Genome Biol Evol 5:484-93. 2013
  5. pmc Vertebrate paralogous MEF2 genes: origin, conservation, and evolution
    Wenwu Wu
    College of Life Science, Northwest A and F University, Yangling, Shaanxi, China
    PLoS ONE 6:e17334. 2011
  6. pmc The influence of deleterious mutations on adaptation in asexual populations
    Xiaoqian Jiang
    Bioinformatics Center, College of Life Science, Northwest A and F University, Yangling, Shaanxi, China
    PLoS ONE 6:e27757. 2011
  7. pmc Coevolution in RNA molecules driven by selective constraints: evidence from 5S rRNA
    Nan Cheng
    StateKey Laboratory of Crop Stress Biology in Arid Areas and College of Life Sciences, Northwest A and F University, Yangling, People s Republic of China
    PLoS ONE 7:e44376. 2012
  8. doi request reprint Universally increased mRNA stability downstream of the translation initiation site in eukaryotes and prokaryotes
    Yuanhui Mao
    State Key Laboratory of Crop Stress Biology in Arid Areas and College of Life Sciences, Northwest A and F University, Yangling, Shaanxi 712100, China
    Gene 517:230-5. 2013
  9. pmc Patterns of nucleotides that flank substitutions in human orthologous genes
    Lei Ma
    Bioinformatics Centre, Northwest A and F University, Yangling, Shaanxi, 712100, China
    BMC Genomics 11:416. 2010
  10. doi request reprint Conservation and evolution in and among SRF- and MEF2-type MADS domains and their binding sites
    Wenwu Wu
    College of Life Science, Northwest A and F University, Yangling, Shaanxi, China
    Mol Biol Evol 28:501-11. 2011

Collaborators

  • Stefan de Folter
  • Li Li
  • Jingjing Li
  • Xia Shen
  • Xiaoqian Jiang
  • Yuanhui Mao
  • Wenwu Wu
  • Nan Cheng
  • Zhuoran Huang
  • Hongxia Pang
  • Qian Li
  • Wangtian Wang
  • Youyi Shi
  • Lei Ma
  • Peiquan Liang
  • Jian Cheng
  • Zhenggang Li
  • Wenqian Zhang
  • Xiaotai Huang
  • Zhao Xu
  • Tingting Zhang
  • Baolin Mu
  • Mingjing Zhang
  • Xiaojuan Wang
  • Su Shing Chen
  • Jiaowei Tang

Detail Information

Publications10

  1. pmc A comparison and evaluation of five biclustering algorithms by quantifying goodness of biclusters for gene expression data
    Li Li
    State Key Laboratory of Crop Stress Biology in Arid Areas and College of Sciences, Northwest A and F University, Yangling, Shaanxi, 712100, China
    BioData Min 5:8. 2012
    ..abstract:..
  2. pmc Impacts of mutation effects and population size on mutation rate in asexual populations: a simulation study
    Xiaoqian Jiang
    Bioinformatics Center, Northwest A and F University, Yangling, Shaanxi 712100, China
    BMC Evol Biol 10:298. 2010
    ..The aim of the present study was to use computer simulations to investigate how natural selection adjusts mutation rate among asexually reproducing subpopulations with different mutation rates...
  3. pmc Statistical distributions of optimal global alignment scores of random protein sequences
    Hongxia Pang
    School of Life Science, Northwest A and F University, Yangling, Shaanxi, China
    BMC Bioinformatics 6:257. 2005
    ..So far the statistical distribution function underlying the optimal global alignments has not been completely determined...
  4. pmc Number variation of high stability regions is correlated with gene functions
    Yuanhui Mao
    College of life Sciences and State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A and F University, Yangling, Shaanxi, China
    Genome Biol Evol 5:484-93. 2013
    ..In addition, essential genes exhibited higher HSR density than nonessential genes. Overall, our study presented the previously unappreciated correlation between the number variation of HSRs and cellular processes...
  5. pmc Vertebrate paralogous MEF2 genes: origin, conservation, and evolution
    Wenwu Wu
    College of Life Science, Northwest A and F University, Yangling, Shaanxi, China
    PLoS ONE 6:e17334. 2011
    ....
  6. pmc The influence of deleterious mutations on adaptation in asexual populations
    Xiaoqian Jiang
    Bioinformatics Center, College of Life Science, Northwest A and F University, Yangling, Shaanxi, China
    PLoS ONE 6:e27757. 2011
    ..And interestingly, the lowest adaptation rate occurs for a moderate value of selection coefficient of deleterious mutations...
  7. pmc Coevolution in RNA molecules driven by selective constraints: evidence from 5S rRNA
    Nan Cheng
    StateKey Laboratory of Crop Stress Biology in Arid Areas and College of Life Sciences, Northwest A and F University, Yangling, People s Republic of China
    PLoS ONE 7:e44376. 2012
    ..In conclusion, our results indicate that sequence coevolution is a direct result of maintaining optimal structural and functional integrity...
  8. doi request reprint Universally increased mRNA stability downstream of the translation initiation site in eukaryotes and prokaryotes
    Yuanhui Mao
    State Key Laboratory of Crop Stress Biology in Arid Areas and College of Life Sciences, Northwest A and F University, Yangling, Shaanxi 712100, China
    Gene 517:230-5. 2013
    ..Overall, our results revealed a previously unappreciated correlation between structural stability and protein localization...
  9. pmc Patterns of nucleotides that flank substitutions in human orthologous genes
    Lei Ma
    Bioinformatics Centre, Northwest A and F University, Yangling, Shaanxi, 712100, China
    BMC Genomics 11:416. 2010
    ..The effect of context on mutagenesis should be revealed in the usage of nucleotides that flank substitutions. Relative entropy (also known as Kullback-Leibler divergence) is useful for finding unusual patterns in biological sequences...
  10. doi request reprint Conservation and evolution in and among SRF- and MEF2-type MADS domains and their binding sites
    Wenwu Wu
    College of Life Science, Northwest A and F University, Yangling, Shaanxi, China
    Mol Biol Evol 28:501-11. 2011
    ....