Jin Wang

Summary

Affiliation: Nanjing University
Country: China

Publications

  1. pmc Centrality-based pathway enrichment: a systematic approach for finding significant pathways dominated by key genes
    Zuguang Gu
    The State Key Laboratory of Pharmaceutical Biotechnology and Jiangsu Engineering Research Center for MicroRNA Biology and Biotechnology, School of Life Science, Nanjing University, Nanjing, 210093, China
    BMC Syst Biol 6:56. 2012
  2. pmc Gene regulation is governed by a core network in hepatocellular carcinoma
    Zuguang Gu
    The State Key Laboratory of Pharmaceutical Biotechnology and Jiangsu Engineering Research Center for MicroRNA Biology and Biotechnology, School of Life Science, Nanjing University, Nanjing 210093, China
    BMC Syst Biol 6:32. 2012
  3. pmc Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network
    Jin Wang
    The State Key Laboratory of Pharmaceutical Biotechnology and Jiangsu Engineering Research Center for MicroRNA Biology and Biotechnology
    BMC Syst Biol 5:199. 2011
  4. pmc Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
    Xi Chen
    Jiangsu Diabetes Center, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Hankou Road, Nanjing, Jiangsu 210093, PR China
    Genome Biol 10:R78. 2009
  5. pmc InterMitoBase: an annotated database and analysis platform of protein-protein interactions for human mitochondria
    Zuguang Gu
    The State Key Laboratory of Pharmaceutical Biotechnology and Jiangsu Engineering Research Center for MicroRNA Biology and Biotechnology, School of Life Science, Nanjing University, Nanjing 210093, China
    BMC Genomics 12:335. 2011
  6. pmc The evolutionary trajectory of mitochondrial carrier family during metazoan evolution
    Ming Gong
    Jiangsu Diabetes Center, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, 22 Hankou Road, Nanjing, Jiangsu 210093, China
    BMC Evol Biol 10:282. 2010
  7. pmc A mutation degree model for the identification of transcriptional regulatory elements
    Changqing Zhang
    State Key Laboratory of Pharmaceutical Biotechnology, School of Life Science, Nanjing University, Nanjing 210093, China
    BMC Bioinformatics 12:262. 2011
  8. pmc MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes
    Huaiqiu Zhu
    State Key Lab for Turbulence and Complex Systems and Department of Biomedical Engineering, Peking University, Beijing 100871, China
    BMC Bioinformatics 8:97. 2007

Detail Information

Publications8

  1. pmc Centrality-based pathway enrichment: a systematic approach for finding significant pathways dominated by key genes
    Zuguang Gu
    The State Key Laboratory of Pharmaceutical Biotechnology and Jiangsu Engineering Research Center for MicroRNA Biology and Biotechnology, School of Life Science, Nanjing University, Nanjing, 210093, China
    BMC Syst Biol 6:56. 2012
    ..Pathways resemble networks with complicated structures, but most of the existing pathway enrichment tools ignore topological information embedded within pathways, which limits their applicability...
  2. pmc Gene regulation is governed by a core network in hepatocellular carcinoma
    Zuguang Gu
    The State Key Laboratory of Pharmaceutical Biotechnology and Jiangsu Engineering Research Center for MicroRNA Biology and Biotechnology, School of Life Science, Nanjing University, Nanjing 210093, China
    BMC Syst Biol 6:32. 2012
    ..Thus, analysis of the mechanism of molecule interactions in the context of gene regulatory networks can reveal specific sub-networks that lead to the development of HCC...
  3. pmc Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network
    Jin Wang
    The State Key Laboratory of Pharmaceutical Biotechnology and Jiangsu Engineering Research Center for MicroRNA Biology and Biotechnology
    BMC Syst Biol 5:199. 2011
    ..This implies a coordinated regulation mode exerted by clustered miRNAs. However, how the clustered miRNAs coordinate their regulations on large scale gene expression is still unclear...
  4. pmc Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
    Xi Chen
    Jiangsu Diabetes Center, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Hankou Road, Nanjing, Jiangsu 210093, PR China
    Genome Biol 10:R78. 2009
    ..While the number of known human and murine miRNAs is continuously increasing, information regarding miRNAs from other species such as amphioxus remains limited...
  5. pmc InterMitoBase: an annotated database and analysis platform of protein-protein interactions for human mitochondria
    Zuguang Gu
    The State Key Laboratory of Pharmaceutical Biotechnology and Jiangsu Engineering Research Center for MicroRNA Biology and Biotechnology, School of Life Science, Nanjing University, Nanjing 210093, China
    BMC Genomics 12:335. 2011
    ..Consequently, the development of a database that provides the entire protein interaction map of the human mitochondrion is urgently required...
  6. pmc The evolutionary trajectory of mitochondrial carrier family during metazoan evolution
    Ming Gong
    Jiangsu Diabetes Center, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, 22 Hankou Road, Nanjing, Jiangsu 210093, China
    BMC Evol Biol 10:282. 2010
    ..However, the evolutionary study of substrate transport of MCF does not mean that all the concrete structures of mitochondrial carriers (MCs) must first be gained...
  7. pmc A mutation degree model for the identification of transcriptional regulatory elements
    Changqing Zhang
    State Key Laboratory of Pharmaceutical Biotechnology, School of Life Science, Nanjing University, Nanjing 210093, China
    BMC Bioinformatics 12:262. 2011
    ....
  8. pmc MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes
    Huaiqiu Zhu
    State Key Lab for Turbulence and Complex Systems and Department of Biomedical Engineering, Peking University, Beijing 100871, China
    BMC Bioinformatics 8:97. 2007
    ..It continues to be interesting to develop new ab initio algorithms which not only accurately predict genes, but also facilitate comparative studies of prokaryotic genomes...