Chen Y, Zhao L, Wang Y, Cao M, Gelowani V, Xu M, et al. SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data. BMC Bioinformatics. 2017;18:147 pubmed publisher
..SeqCNV is able to robustly identify CNVs of different size using capture NGS data. Compared with other CNV-calling methods, SeqCNV shows a significant improvement in both sensitivity and specificity. ..
Liu S, Wang Y, Wang F. A fast read alignment method based on seed-and-vote for next generation sequencing. BMC Bioinformatics. 2016;17:466 pubmed publisher
..In some cases, reads have to be aligned in a short time. Where requirement of accuracy is not very stringent, FSVA would be a promising option. FSVA is available at https://github.com/Topwood91/FSVA. ..