Qingpo Liu

Summary

Affiliation: Chinese Academy of Sciences
Country: China

Publications

  1. ncbi request reprint Analysis of codon usage pattern in the radioresistant bacterium Deinococcus radiodurans
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China
    Biosystems 85:99-106. 2006
  2. ncbi request reprint Identification of rice TUBBY-like genes and their evolution
    Qingpo Liu
    School of Agriculture and Food Science, Zhejiang Forestry University, Hangzhou, Lin an, China
    FEBS J 275:163-71. 2008
  3. ncbi request reprint Molecular evolution of the MLO gene family in Oryza sativa and their functional divergence
    Qingpo Liu
    School of Agriculture and Food Science, Zhejiang Forestry University, Hangzhou, Lin an 311300, People s Republic of China
    Gene 409:1-10. 2008
  4. ncbi request reprint Evolution and functional divergence of monocarboxylate transporter genes in vertebrates
    Qingpo Liu
    School of Agricultural and Food Science, Zhejiang Forestry University, Lin an, Hangzhou 311300, China
    Gene 423:14-22. 2008
  5. ncbi request reprint Computational identification and systematic analysis of the ACR gene family in Oryza sativa
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, PR China
    J Plant Physiol 163:445-51. 2006
  6. ncbi request reprint Comparative studies on sequence characteristics around translation initiation codon in four eukaryotes
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, 310029 Hangzhou, People s Republic of China
    J Genet 84:317-22. 2005
  7. ncbi request reprint Comparative analysis of base biases around the stop codons in six eukaryotes
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China
    Biosystems 81:281-9. 2005
  8. ncbi request reprint Comparative studies on codon usage pattern of chloroplasts and their host nuclear genes in four plant species
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, 310029 Hangzhou, People s Republic of China
    J Genet 84:55-62. 2005
  9. ncbi request reprint Computational identification of novel PR-1-type genes in Oryza sativa
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, 310029 Hangzhou, China
    J Genet 85:193-8. 2006
  10. pmc Divergence in function and expression of the NOD26-like intrinsic proteins in plants
    Qingpo Liu
    School of Agriculture and Food Science, Zhejiang Forestry University, Lin an, Hangzhou, PR China
    BMC Genomics 10:313. 2009

Detail Information

Publications21

  1. ncbi request reprint Analysis of codon usage pattern in the radioresistant bacterium Deinococcus radiodurans
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China
    Biosystems 85:99-106. 2006
    ..radiodurans. Notably, 19 codons firstly defined as "optimal codons" may provide useful clues for molecular genetic engineering and evolutionary studying...
  2. ncbi request reprint Identification of rice TUBBY-like genes and their evolution
    Qingpo Liu
    School of Agriculture and Food Science, Zhejiang Forestry University, Hangzhou, Lin an, China
    FEBS J 275:163-71. 2008
    ..Based on posterior probability analysis, five amino acid sites (103, 312, 315, 317 and 319) are thought to be responsible for functional divergence...
  3. ncbi request reprint Molecular evolution of the MLO gene family in Oryza sativa and their functional divergence
    Qingpo Liu
    School of Agriculture and Food Science, Zhejiang Forestry University, Hangzhou, Lin an 311300, People s Republic of China
    Gene 409:1-10. 2008
    ..The sliding window analysis of d(N)/d(S) ratio values identified one sequence region where strong functional constraints must impose on, and consequently should be crucial for functionality of MLO genes...
  4. ncbi request reprint Evolution and functional divergence of monocarboxylate transporter genes in vertebrates
    Qingpo Liu
    School of Agricultural and Food Science, Zhejiang Forestry University, Lin an, Hangzhou 311300, China
    Gene 423:14-22. 2008
    ..These corresponding regions may play crucial roles for functionality of MCT proteins...
  5. ncbi request reprint Computational identification and systematic analysis of the ACR gene family in Oryza sativa
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, PR China
    J Plant Physiol 163:445-51. 2006
    ..Notably, the identification of orthologues and paralogues would be useful for rice gene functional annotation...
  6. ncbi request reprint Comparative studies on sequence characteristics around translation initiation codon in four eukaryotes
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, 310029 Hangzhou, People s Republic of China
    J Genet 84:317-22. 2005
  7. ncbi request reprint Comparative analysis of base biases around the stop codons in six eukaryotes
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China
    Biosystems 81:281-9. 2005
    ..Accordingly, it could be inferred that those candidate amino acids might involve in the recognition process. Moreover, the possible stop signal recognition hypothesis was also discussed herein...
  8. ncbi request reprint Comparative studies on codon usage pattern of chloroplasts and their host nuclear genes in four plant species
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, 310029 Hangzhou, People s Republic of China
    J Genet 84:55-62. 2005
    ..However, one feature common to both chloroplast and nuclear genomes in this study was that pyrimidines were found more frequently than purines at the synonymous codon position of optimal codons...
  9. ncbi request reprint Computational identification of novel PR-1-type genes in Oryza sativa
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, 310029 Hangzhou, China
    J Genet 85:193-8. 2006
  10. pmc Divergence in function and expression of the NOD26-like intrinsic proteins in plants
    Qingpo Liu
    School of Agriculture and Food Science, Zhejiang Forestry University, Lin an, Hangzhou, PR China
    BMC Genomics 10:313. 2009
    ..To better understand this process, a comprehensive analysis including the phylogenetic, positive selection, functional divergence, and transcriptional analysis was carried out...
  11. ncbi request reprint Synonymous codon usage and gene function are strongly related in Oryza sativa
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
    Biosystems 80:123-31. 2005
    ..These observations will be more important for molecular genetic engineering and genome functional annotation...
  12. ncbi request reprint Computational identification and sequence analysis of stop codon readthrough genes in Oryza sativa
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China
    Biosystems 77:33-9. 2004
    ..7%), which indicated that the amino acids at the readthrough region being frequently located in the hydrophilic region of beta-turn might be a determinant for efficient translation termination or not...
  13. ncbi request reprint Comparative study of rice and Arabidopsis actin-depolymerizing factors gene families
    Ying Feng
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, PR China
    J Plant Physiol 163:69-79. 2006
    ..The ADF proteins were divided into four groups based on the phylogenetic relationships of the amino acid sequences, and was comparable with previous studies...
  14. ncbi request reprint Molecular phylogeny, evolution, and functional divergence of the LSD1-like gene family: inference from the rice genome
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, P R China
    J Mol Evol 64:354-63. 2007
    ....
  15. ncbi request reprint Computational identification and phylogenetic analysis of the MAPK gene family in Oryza sativa
    Qingpo Liu
    Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, No 268, Kaixuan Road, Hangzhou, Zhejiang 310029, China
    Plant Physiol Biochem 45:6-14. 2007
    ..Overall, the first description of the whole MAPK family will be expected to result in significant progress in investigating the regulation mechanism of MAPKs in response to extracellular stimuli...
  16. ncbi request reprint Dicer-like (DCL) proteins in plants
    Qingpo Liu
    School of Agriculture and Food Science, Zhejiang Forestry University, Lin an, Hangzhou, People s Republic of China
    Funct Integr Genomics 9:277-86. 2009
    ..Posterior analysis has identified some critical amino acid sites that are responsible for functional divergence between DCL family members. These findings provide new insights into understanding DCL protein functions...
  17. pmc Functional divergence of the NIP III subgroup proteins involved altered selective constraints and positive selection
    Qingpo Liu
    College of Agriculture and Food Science, Zhejiang A and F University, Lin an, Hangzhou 311300, China
    BMC Plant Biol 10:256. 2010
    ..It is therefore intriguing to investigate the molecular mechanisms that drive the evolution of plant NIP2s...
  18. doi request reprint Novel miRNAs in the control of arsenite levels in rice
    Qingpo Liu
    College of Agriculture and Food Science, Zhejiang A and F University, Lin an, Hangzhou, People s Republic of China
    Funct Integr Genomics 12:649-58. 2012
    ..Interestingly, miR6254 was originally characterized to be an exonic miRNA located in the exon of AK101391, supporting the notion that miRNAs may also originate from some exons in plants...
  19. pmc Analyses of the sucrose synthase gene family in cotton: structure, phylogeny and expression patterns
    Aiqun Chen
    School of Agriculture and Food Science, Zhejiang A and F University, Lin an, Hangzhou, Zhejiang 311300, China
    BMC Plant Biol 12:85. 2012
    ..Several paralogous genes encoding different isozymes of Sus have been identified and characterized in multiple plant genomes, while limited information of Sus genes is available to date for cotton...
  20. doi request reprint Gene conversion and positive selection driving the evolution of the Caenorhabditis ssp. ZIM/HIM-8 protein family
    Qingpo Liu
    School of Agriculture and Food Science, Zhejiang Forestry University, Lin an 311300, Hangzhou, People s Republic of China
    J Mol Evol 68:217-26. 2009
    ..In comparison, stronger positive selection has acted on the C-terminal region relative to the N-terminal region. Thus, the zim/him-8 genes that evolve concertedly have also been shown to undergo adaptive diversifying selection...
  21. doi request reprint Molecular identification and analysis of arsenite stress-responsive miRNAs in rice
    Qingpo Liu
    College of Agriculture and Food Science, Zhejiang A and F University, Lin an, Hangzhou 311300, People s Republic of China
    J Agric Food Chem 60:6524-36. 2012
    ..The first identification of arsenite-responsive miRNAs at the whole genome-wide level will broaden the current understanding of the molecular mechanisms of arsenite responses in rice...