Sanwen Huang

Summary

Affiliation: Chinese Academy of Agricultural Sciences
Country: China

Publications

  1. ncbi The genome of the cucumber, Cucumis sativus L
    Sanwen Huang
    Key Laboratory of Horticultural Crops Genetic Improvement of Ministry of Agriculture, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
    Nat Genet 41:1275-81. 2009
  2. ncbi Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)
    Pablo F Cavagnaro
    Horticulture Department, University of Wisconsin, Madison, WI 53706, USA
    BMC Genomics 11:569. 2010
  3. ncbi Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
    Shaogui Guo
    1National Engineering Research Center for Vegetables, Beijing 100097, China
    BMC Genomics 11:384. 2010
  4. ncbi Fine genetic mapping localizes cucumber scab resistance gene Ccu into an R gene cluster
    Houxiang Kang
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
    Theor Appl Genet 122:795-803. 2011
  5. ncbi Genome-wide analysis of WRKY gene family in Cucumis sativus
    Jian Ling
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing, 100081 China
    BMC Genomics 12:471. 2011
  6. ncbi An integrated genetic and cytogenetic map of the cucumber genome
    Yi Ren
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Sino Dutch Joint Lab of Horticultural Genomics, Opening Lab of Genetic Improvement of Agricultural Crops of Ministry of Agriculture, Beijing, China
    PLoS ONE 4:e5795. 2009
  7. ncbi The genome of the mesopolyploid crop species Brassica rapa
    Xiaowu Wang
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences IVF, CAAS, Beijing, China
    Nat Genet 43:1035-9. 2011
  8. ncbi RNA-Seq improves annotation of protein-coding genes in the cucumber genome
    Zhen Li
    College of Life Sciences, Beijing Normal University, 19 Xinjiekouwai Street, Beijing, 100875, China
    BMC Genomics 12:540. 2011
  9. ncbi Genetic diversity and population structure of cucumber (Cucumis sativus L.)
    Jing Lv
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Sino Dutch Joint Lab of Horticultural Genomics, Opening Lab of Genetic Improvement of Agricultural Crops of Ministry of Agriculture, Beijing, China
    PLoS ONE 7:e46919. 2012

Collaborators

Detail Information

Publications9

  1. ncbi The genome of the cucumber, Cucumis sativus L
    Sanwen Huang
    Key Laboratory of Horticultural Crops Genetic Improvement of Ministry of Agriculture, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
    Nat Genet 41:1275-81. 2009
    ..We also identify 686 gene clusters related to phloem function. The cucumber genome provides a valuable resource for developing elite cultivars and for studying the evolution and function of the plant vascular system...
  2. ncbi Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)
    Pablo F Cavagnaro
    Horticulture Department, University of Wisconsin, Madison, WI 53706, USA
    BMC Genomics 11:569. 2010
    ..Similar analyses were performed in genomic and EST data from seven other plant species, and the results were compared with those of cucumber...
  3. ncbi Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
    Shaogui Guo
    1National Engineering Research Center for Vegetables, Beijing 100097, China
    BMC Genomics 11:384. 2010
    ....
  4. ncbi Fine genetic mapping localizes cucumber scab resistance gene Ccu into an R gene cluster
    Houxiang Kang
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
    Theor Appl Genet 122:795-803. 2011
    ..Comparative DNA analysis of this cucumber Ccu gene region with a melon (C. melo) bacterial artificial chromosome (BAC) clone revealed a high degree of micro-synteny and conservation of the RGA tandem repeats in this region...
  5. ncbi Genome-wide analysis of WRKY gene family in Cucumis sativus
    Jian Ling
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing, 100081 China
    BMC Genomics 12:471. 2011
    ....
  6. ncbi An integrated genetic and cytogenetic map of the cucumber genome
    Yi Ren
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Sino Dutch Joint Lab of Horticultural Genomics, Opening Lab of Genetic Improvement of Agricultural Crops of Ministry of Agriculture, Beijing, China
    PLoS ONE 4:e5795. 2009
    ..This map will facilitate whole genome sequencing, positional cloning, and molecular breeding in cucumber, and enable the integration of knowledge of gene and trait in cucurbits...
  7. ncbi The genome of the mesopolyploid crop species Brassica rapa
    Xiaowu Wang
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences IVF, CAAS, Beijing, China
    Nat Genet 43:1035-9. 2011
    ..The B. rapa genome sequence provides an important resource for studying the evolution of polyploid genomes and underpins the genetic improvement of Brassica oil and vegetable crops...
  8. ncbi RNA-Seq improves annotation of protein-coding genes in the cucumber genome
    Zhen Li
    College of Life Sciences, Beijing Normal University, 19 Xinjiekouwai Street, Beijing, 100875, China
    BMC Genomics 12:540. 2011
    ..We applied the new pipeline to the reassembled cucumber genome and included a comparison between our predicted protein-coding gene sets and a published set...
  9. ncbi Genetic diversity and population structure of cucumber (Cucumis sativus L.)
    Jing Lv
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Sino Dutch Joint Lab of Horticultural Genomics, Opening Lab of Genetic Improvement of Agricultural Crops of Ministry of Agriculture, Beijing, China
    PLoS ONE 7:e46919. 2012
    ..Insight into the genetic structure of cucumber will help developing appropriate conservation strategies and provides a basis for population-level genome sequencing in cucumber...