Xiangdong Ding

Summary

Affiliation: China Agricultural University
Country: China

Publications

  1. pmc Comparison of different imputation methods from low- to high-density panels using Chinese Holstein cattle
    Z Weng
    China Agricultural University, Beijing, China
    Animal 7:729-35. 2013
  2. pmc Application of imputation methods to genomic selection in Chinese Holstein cattle
    Ziqing Weng
    Key Laboratory of Animal Genetics Breeding and Reproduction, Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, China
    J Anim Sci Biotechnol 3:6. 2012
  3. pmc Genome-wide association study for T lymphocyte subpopulations in swine
    Xin Lu
    Key Laboratory Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, College of Animal Science and Technology, National Engineering Laboratory for Animal Breeding, China Agricultural University, Beijing 100193, China
    BMC Genomics 13:488. 2012
  4. pmc A genome-wide detection of copy number variations using SNP genotyping arrays in swine
    Jiying Wang
    Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China
    BMC Genomics 13:273. 2012
  5. pmc Consistency of linkage disequilibrium between Chinese and Nordic Holsteins and genomic prediction for Chinese Holsteins using a joint reference population
    Lei Zhou
    Department of Molecular Biology and Genetics, Aarhus University, Tjele DK 8830, Denmark
    Genet Sel Evol 45:7. 2013
  6. pmc Comparison of five methods for genomic breeding value estimation for the common dataset of the 15th QTL-MAS Workshop
    Chong Long Wang
    Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture of China, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China
    BMC Proc 6:S13. 2012
  7. pmc Genome-wide association analyses of the 15th QTL-MAS workshop data using mixed model based single locus regression analysis
    Wei Xuan Fu
    Key Laboratory of Animal Genetics and Breeding of the Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China
    BMC Proc 6:S5. 2012
  8. pmc Genomic selection for QTL-MAS data using a trait-specific relationship matrix
    Zhe Zhang
    Key Laboratory of Animal Genetics and Breeding of the Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, China
    BMC Proc 5:S15. 2011
  9. pmc Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins
    Li Jiang
    Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, PR China
    BMC Genomics 14:131. 2013
  10. pmc Genome-wide association study for cytokines and immunoglobulin G in swine
    Xin Lu
    Key Laboratory Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, China Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, State Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
    PLoS ONE 8:e74846. 2013

Collaborators

Detail Information

Publications16

  1. pmc Comparison of different imputation methods from low- to high-density panels using Chinese Holstein cattle
    Z Weng
    China Agricultural University, Beijing, China
    Animal 7:729-35. 2013
    ..Considering imputation accuracy and computational requirements, BEAGLE has been found to be more reliable for imputing genotypes from low- to high-density genotyping platforms...
  2. pmc Application of imputation methods to genomic selection in Chinese Holstein cattle
    Ziqing Weng
    Key Laboratory of Animal Genetics Breeding and Reproduction, Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, China
    J Anim Sci Biotechnol 3:6. 2012
    ..We concluded that performing imputation before quality control could increase the accuracy of genomic selection, especially when the rate of missing genotypes is high and the reference population is small...
  3. pmc Genome-wide association study for T lymphocyte subpopulations in swine
    Xin Lu
    Key Laboratory Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, College of Animal Science and Technology, National Engineering Laboratory for Animal Breeding, China Agricultural University, Beijing 100193, China
    BMC Genomics 13:488. 2012
    ..Identification of the genetic control on these variants may help the genetic improvement of immune capacity through selection...
  4. pmc A genome-wide detection of copy number variations using SNP genotyping arrays in swine
    Jiying Wang
    Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China
    BMC Genomics 13:273. 2012
    ..Comprehensive identification and cataloging of pig CNVs would be of benefit to the functional analyses of genome variation...
  5. pmc Consistency of linkage disequilibrium between Chinese and Nordic Holsteins and genomic prediction for Chinese Holsteins using a joint reference population
    Lei Zhou
    Department of Molecular Biology and Genetics, Aarhus University, Tjele DK 8830, Denmark
    Genet Sel Evol 45:7. 2013
    ....
  6. pmc Comparison of five methods for genomic breeding value estimation for the common dataset of the 15th QTL-MAS Workshop
    Chong Long Wang
    Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture of China, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China
    BMC Proc 6:S13. 2012
    ..Here, we applied two BLUP methods, TABLUP and GBLUP, and three Bayesian methods, BayesA, BayesB and BayesCĎ€, to the common dataset provided by the 15th QTL-MAS Workshop to evaluate and compare their predictive performances...
  7. pmc Genome-wide association analyses of the 15th QTL-MAS workshop data using mixed model based single locus regression analysis
    Wei Xuan Fu
    Key Laboratory of Animal Genetics and Breeding of the Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China
    BMC Proc 6:S5. 2012
    ..Linkage disequilibrium (LD) in term of D' between significant SNPs was quantified and LD blocks were defined to indicate quantitative trait loci (QTL) regions...
  8. pmc Genomic selection for QTL-MAS data using a trait-specific relationship matrix
    Zhe Zhang
    Key Laboratory of Animal Genetics and Breeding of the Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, China
    BMC Proc 5:S15. 2011
    ....
  9. pmc Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins
    Li Jiang
    Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, PR China
    BMC Genomics 14:131. 2013
    ..Comprehensive explore novel CNVs in the bovine genome would provide valuable information for functional analyses of genome structural variation and facilitating follow-up association studies between complex traits and genetic variants...
  10. pmc Genome-wide association study for cytokines and immunoglobulin G in swine
    Xin Lu
    Key Laboratory Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, China Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, State Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
    PLoS ONE 8:e74846. 2013
    ..Results herein lay a preliminary foundation for further identifying the causal mutations affecting swine immune capacity in follow-up studies. ..
  11. pmc Detection of genetic association and functional polymorphisms of UGDH affecting milk production trait in Chinese Holstein cattle
    Qing Xu
    Department of Animal Genetics and Breeding, College of Animal Science and Technology, Key Laboratory of Animal Genetics and Breeding of Ministry of Agriculture, National Engineering Laboratory for Animal Breeding, China Agricultural University, Beijing 100193, China
    BMC Genomics 13:590. 2012
    ..We previously localized a quantitative trait locus (QTL) on bovine chromosome 6 affecting milk production traits to a 1.5-Mb region between BMS483 and MNB-209 via genome scanning followed by fine mapping...
  12. pmc Genome wide association studies for body conformation traits in the Chinese Holstein cattle population
    Xiaoping Wu
    Key Laboratory of Animal Genetics and Breeding of Ministry of Agriculture, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, 2 Yuanmingyuan West Road, Beijing 100193, China
    BMC Genomics 14:897. 2013
    ..However, studies using GWAS for conformation traits of cattle is comparatively less. This study aims to use GWAS to find the candidates genes for body conformation traits...
  13. ncbi request reprint [Bayesian methods for genomic breeding value estimation]
    Chonglong Wang
    1 Institute of Animal Husbandry and Veterinary Medicine, Anhui Academy of Agricultural Sciences, Hefei 230031, China 2 College of Animal Science and Technology, China Agricultural University, Beijing 100193, China
    Yi Chuan 36:111-8. 2014
    ..Therefore, the application of Bayesian methods will be more extensive. ..
  14. pmc Gene silencing of porcine MUC13 and ITGB5: candidate genes towards Escherichia coli F4ac adhesion
    Chuanli Zhou
    Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, P R China
    PLoS ONE 8:e70303. 2013
    ..Human MUC13 protein has an expected role in protecting intestinal mucosal surfaces and porcine ITGB5 is a newly identified potential receptor for ETEC F4ac...
  15. pmc Genome-wide identification of copy number variations in Chinese Holstein
    Li Jiang
    Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, People s Republic of China
    PLoS ONE 7:e48732. 2012
    ....
  16. pmc Identification of selection footprints on the X chromosome in pig
    Yunlong Ma
    Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, P R China
    PLoS ONE 9:e94911. 2014
    ..In addition, three out of five significant SNPs associated with hematological traits reported in our genome-wide association study were harbored in potential selection regions...