Wei Chen

Summary

Country: China

Publications

  1. ncbi Prediction of replication origins by calculating DNA structural properties
    Wei Chen
    Department of Physics, School of Sciences, Hebei United University, Tangshan, China
    FEBS Lett 586:934-8. 2012
  2. ncbi Identification of voltage-gated potassium channel subfamilies from sequence information using support vector machine
    Wei Chen
    Department of Physics, College of Sciences, Hebei United University, Tangshan 063000, China
    Comput Biol Med 42:504-7. 2012
  3. ncbi Prediction of ketoacyl synthase family using reduced amino acid alphabets
    Wei Chen
    Department of Physics, College of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan 063000, China
    J Ind Microbiol Biotechnol 39:579-84. 2012
  4. ncbi Recognition of DNase I hypersensitive sites in multiple cell lines
    Wei Chen
    Laboratory of Theoretical Biophysics, School of Physical Science and Technology, Inner Mongolia University, Hohhot 010021, China
    Int J Bioinform Res Appl 5:378-84. 2009
  5. ncbi Prediction of midbody, centrosome and kinetochore proteins based on gene ontology information
    Wei Chen
    Department of Physics, School of Basic Medical Sciences, North China Coal Medical University, Tangshan 063000, China
    Biochem Biophys Res Commun 401:382-4. 2010
  6. ncbi The organization of nucleosomes around splice sites
    Wei Chen
    Laboratory of Theoretical Biophysics, School of Physical Science and Technology, Inner Mongolia University, Hohhot 010021, China
    Nucleic Acids Res 38:2788-98. 2010
  7. ncbi iNuc-PhysChem: a sequence-based predictor for identifying nucleosomes via physicochemical properties
    Wei Chen
    Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan, China
    PLoS ONE 7:e47843. 2012
  8. ncbi Classification of antimicrobial peptide using diversity measure with quadratic discriminant analysis
    Wei Chen
    Laboratory of Theoretical Biophysics, School of Physical Science and Technology, Inner Mongolia University, Hohhot, 010021, China
    J Microbiol Methods 78:94-6. 2009

Detail Information

Publications8

  1. ncbi Prediction of replication origins by calculating DNA structural properties
    Wei Chen
    Department of Physics, School of Sciences, Hebei United University, Tangshan, China
    FEBS Lett 586:934-8. 2012
    ..The predictive performance of the jackknife cross-validation indicates that DNA bendability and cleavage intensity have the ability to describe core replication regions and our model is effective in ORI prediction...
  2. ncbi Identification of voltage-gated potassium channel subfamilies from sequence information using support vector machine
    Wei Chen
    Department of Physics, College of Sciences, Hebei United University, Tangshan 063000, China
    Comput Biol Med 42:504-7. 2012
    ..These results indicate that VKCPred can be efficiently used to identify and annotate voltage-gated K(+) channels' subfamilies. The VKCPred software and dataset are freely available at http://cobi.uestc.edu.cn/people/hlin/tools/VKCPred/...
  3. ncbi Prediction of ketoacyl synthase family using reduced amino acid alphabets
    Wei Chen
    Department of Physics, College of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan 063000, China
    J Ind Microbiol Biotechnol 39:579-84. 2012
    ....
  4. ncbi Recognition of DNase I hypersensitive sites in multiple cell lines
    Wei Chen
    Laboratory of Theoretical Biophysics, School of Physical Science and Technology, Inner Mongolia University, Hohhot 010021, China
    Int J Bioinform Res Appl 5:378-84. 2009
    ..52%, 96.50%, 99.25% and 97.58%, respectively, and the mean areas under ROC curves (auROC) are all greater than 0.90. The prediction results indicate that the IDQD method is an effective tool for DHSs recognition...
  5. ncbi Prediction of midbody, centrosome and kinetochore proteins based on gene ontology information
    Wei Chen
    Department of Physics, School of Basic Medical Sciences, North China Coal Medical University, Tangshan 063000, China
    Biochem Biophys Res Commun 401:382-4. 2010
    ..The prediction model and dataset used in this article can be freely downloaded from http://cobi.uestc.edu.cn/people/hlin/tools/MicekiPred/...
  6. ncbi The organization of nucleosomes around splice sites
    Wei Chen
    Laboratory of Theoretical Biophysics, School of Physical Science and Technology, Inner Mongolia University, Hohhot 010021, China
    Nucleic Acids Res 38:2788-98. 2010
    ....
  7. ncbi iNuc-PhysChem: a sequence-based predictor for identifying nucleosomes via physicochemical properties
    Wei Chen
    Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan, China
    PLoS ONE 7:e47843. 2012
    ..It is anticipated that iNuc-PhysChem may become a useful high throughput tool for both basic research and drug design...
  8. ncbi Classification of antimicrobial peptide using diversity measure with quadratic discriminant analysis
    Wei Chen
    Laboratory of Theoretical Biophysics, School of Physical Science and Technology, Inner Mongolia University, Hohhot, 010021, China
    J Microbiol Methods 78:94-6. 2009
    ..In this work, an excellent algorithm of Increment of Diversity with Quadratic Discriminant analysis (IDQD) was proposed to classify antimicrobial peptides with diverse biological activities...