Min Li

Summary

Affiliation: Central South University
Country: China

Publications

  1. pmc Biological network motif detection and evaluation
    Wooyoung Kim
    Department of Computer Science, Georgia State University, Atlanta, GA, USA
    BMC Syst Biol 5:S5. 2011
  2. doi request reprint Identification of essential proteins from weighted protein-protein interaction networks
    Min Li
    School of Information Science and Engineering, Central South University, Changsha, Hunan 410083, P R China
    J Bioinform Comput Biol 11:1341002. 2013
  3. pmc Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data
    Min Li
    School of Information Science and Engineering, Central South University, Changsha, China
    BMC Bioinformatics 13:109. 2012
  4. pmc A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data
    Min Li
    School of Information Science and Engineering, Central South University, Changsha, Hunan, P R China
    BMC Syst Biol 6:15. 2012
  5. ncbi request reprint Identifying the overlapping complexes in protein interaction networks
    Min Li
    School of Information Science and Engineering, Central South University, Changsha 410083, China
    Int J Data Min Bioinform 4:91-108. 2010
  6. pmc Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
    Min Li
    School of Information Science and Engineering, Central South University, Changsha, Hunan 410083, PR China
    BMC Bioinformatics 9:398. 2008
  7. doi request reprint A local average connectivity-based method for identifying essential proteins from the network level
    Min Li
    School of Information Science and Engineering, Central South University, Changsha 410083, PR China
    Comput Biol Chem 35:143-50. 2011
  8. doi request reprint Tetrahydroxystilbene glucoside improves the learning and memory of amyloid-β(₁₋₄₂)-injected rats and may be connected to synaptic changes in the hippocampus
    Lin Zhou
    Department of Neurology, Xiangya Hospital, Central South University, Changsha, Hunan, P R China
    Can J Physiol Pharmacol 90:1446-55. 2012
  9. doi request reprint A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks
    Jianxin Wang
    Department of Computer Science, School of Information Science and Engineering, Central South University, Changsha 410083, China
    IEEE/ACM Trans Comput Biol Bioinform 8:607-20. 2011
  10. pmc A comparison of the functional modules identified from time course and static PPI network data
    Xiwei Tang
    School of Information Science and Engineering, Central South University, Changsha, 410083, China
    BMC Bioinformatics 12:339. 2011

Collaborators

Detail Information

Publications21

  1. pmc Biological network motif detection and evaluation
    Wooyoung Kim
    Department of Computer Science, Georgia State University, Atlanta, GA, USA
    BMC Syst Biol 5:S5. 2011
    ..Since network motif discovery involves computationally challenging processes, previous algorithms have focused on computational efficiency. However, we believe that the biological quality of network motifs is also very important...
  2. doi request reprint Identification of essential proteins from weighted protein-protein interaction networks
    Min Li
    School of Information Science and Engineering, Central South University, Changsha, Hunan 410083, P R China
    J Bioinform Comput Biol 11:1341002. 2013
    ..Even about 20% improvements were obtained from closeness centrality and subgraph centrality. ..
  3. pmc Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data
    Min Li
    School of Information Science and Engineering, Central South University, Changsha, China
    BMC Bioinformatics 13:109. 2012
    ..However, most of them considered the PPI networks as static graphs and overlooked the dynamics inherent within these networks. Moreover, few of them can distinguish between protein complexes and functional modules...
  4. pmc A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data
    Min Li
    School of Information Science and Engineering, Central South University, Changsha, Hunan, P R China
    BMC Syst Biol 6:15. 2012
    ..However, the network topology-based centrality measures are very sensitive to the robustness of network. Therefore, a new robust essential protein discovery method would be of great value...
  5. ncbi request reprint Identifying the overlapping complexes in protein interaction networks
    Min Li
    School of Information Science and Engineering, Central South University, Changsha 410083, China
    Int J Data Min Bioinform 4:91-108. 2010
    ..The algorithm IPC-MCE is applied to the protein interaction network of Saccharomyces cerevisiae. Many well-known protein complexes are detected...
  6. pmc Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
    Min Li
    School of Information Science and Engineering, Central South University, Changsha, Hunan 410083, PR China
    BMC Bioinformatics 9:398. 2008
    ..As the size of protein-protein interaction set increases, a general trend is to represent the interactions as a network and to develop effective algorithms to detect significant complexes in such networks...
  7. doi request reprint A local average connectivity-based method for identifying essential proteins from the network level
    Min Li
    School of Information Science and Engineering, Central South University, Changsha 410083, PR China
    Comput Biol Chem 35:143-50. 2011
    ..The comparison results based on the validations of sensitivity, specificity, F-measure, positive predictive value, negative predictive value, and accuracy consistently show that LAC outweighs these seven previous methods...
  8. doi request reprint Tetrahydroxystilbene glucoside improves the learning and memory of amyloid-β(₁₋₄₂)-injected rats and may be connected to synaptic changes in the hippocampus
    Lin Zhou
    Department of Neurology, Xiangya Hospital, Central South University, Changsha, Hunan, P R China
    Can J Physiol Pharmacol 90:1446-55. 2012
    ..These alterations were reversed by the administration of TSG, suggesting that TSG exerts anti-AD properties by protecting synaptic structure and function. TSG-induced upregulation of Src and NR2B may be responsible for this process...
  9. doi request reprint A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks
    Jianxin Wang
    Department of Computer Science, School of Information Science and Engineering, Central South University, Changsha 410083, China
    IEEE/ACM Trans Comput Biol Bioinform 8:607-20. 2011
    ..Compared to other previous competing algorithms, our algorithm HC-PIN is faster and more accurate...
  10. pmc A comparison of the functional modules identified from time course and static PPI network data
    Xiwei Tang
    School of Information Science and Engineering, Central South University, Changsha, 410083, China
    BMC Bioinformatics 12:339. 2011
    ..The shift from static to dynamic network analysis is essential for further understanding of molecular systems...
  11. pmc An effective method for refining predicted protein complexes based on protein activity and the mechanism of protein complex formation
    Jianxin Wang
    School of Information Science and Engineering, Central South University, Changsha 410083, China
    BMC Syst Biol 7:28. 2013
    ....
  12. doi request reprint hF-measure: A new measurement for evaluating clusters in protein-protein interaction networks
    Min Li
    School of Information Science and Engineering, Central South University, Changsha, China
    Proteomics 13:291-300. 2013
    ..Especially, hF-measure(Tb) can capture the topology changes in clusters, which can also be used to the analysis of dynamic network...
  13. doi request reprint Construction and application of dynamic protein interaction network based on time course gene expression data
    Jianxin Wang
    School of Information Science and Engineering, Central South University, Changsha, China
    Proteomics 13:301-12. 2013
    ....
  14. doi request reprint Identifying protein complexes from interactome based on essential proteins and local fitness method
    Jianxin Wang
    School of Information Science and Engineering, Central South University, Changsha, 410005, China
    IEEE Trans Nanobioscience 11:324-35. 2012
    ..The program and related files available on https://github.com/gangchen/epof...
  15. doi request reprint Identification of essential proteins based on edge clustering coefficient
    Jianxin Wang
    School of Information Science and Engineering, Central South University, Computer Building, Changsha 410083, China
    IEEE/ACM Trans Comput Biol Bioinform 9:1070-80. 2012
    ..Moreover, the essential proteins discovered by NC show significant cluster effect...
  16. pmc Identifying protein complexes from interaction networks based on clique percolation and distance restriction
    Jianxin Wang
    School of Information Science and Engineering, Central South University, Changsha 410083, China
    BMC Genomics 11:S10. 2010
    ..Each protein might be subordinate multiple protein complexes in the real protein-protein interaction networks. Identifying overlapping protein complexes from protein-protein interaction networks is a considerable research topic...
  17. pmc Recent advances in clustering methods for protein interaction networks
    Jianxin Wang
    School of Information Science and Engineering, Central South University, Changsha 410083, China
    BMC Genomics 11:S10. 2010
    ..The predictions of protein functions and interactions based on modules will be covered. Finally, the performance of different clustering methods will be compared and the directions for future research will be discussed...
  18. pmc Predicting β-turns in protein using kernel logistic regression
    Murtada Khalafallah Elbashir
    School of Information Science and Engineering, Central South University, Changsha 410083, China
    Biomed Res Int 2013:870372. 2013
    ..In addition, KLR yields probabilistic outcome and has a well-defined extension to multiclass case...
  19. pmc Integration of breast cancer gene signatures based on graph centrality
    Jianxin Wang
    School of Information Science and Engineering, Central South University, Changsha, 410083, China
    BMC Syst Biol 5:S10. 2011
    ..However due to small overlap between different signatures, it is challenging to integrate existing disjoint signatures to provide a unified insight on the association between gene expression and clinical outcome...
  20. doi request reprint Identification of hierarchical and overlapping functional modules in PPI networks
    Jianxin Wang
    School of Information Science and Engineering, Central SouthUniversity, Changsha, 410083, China
    IEEE Trans Nanobioscience 11:386-93. 2012
    ..The experimental results show that OH-PIN outperforms the existing algorithms in terms of the functional enrichment and matching with known protein complexes...
  21. doi request reprint Tetrahydroxystilbene glucoside improves learning and (or) memory ability of aged rats and may be connected to the APP pathway
    Ying Hou
    Department of Neurology, Xiangya Hospital, Central South University, Changsha, Hunan, People s Republic of China
    Can J Physiol Pharmacol 89:801-9. 2011
    ..TSG might exert this effect through the APP pathway, although further studies on the topic are required...