Rodrigo A Gutierrez

Summary

Country: Chile

Publications

  1. doi request reprint Systems biology for enhanced plant nitrogen nutrition
    Rodrigo A Gutierrez
    FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Avenida Libertador Bernardo O Higgins 340, Santiago, Chile
    Science 336:1673-5. 2012
  2. doi request reprint Nitrogen control of developmental phase transitions in Arabidopsis thaliana
    Elena A Vidal
    FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Santiago, Chile
    J Exp Bot 65:5611-8. 2014
  3. pmc Systems approaches map regulatory networks downstream of the auxin receptor AFB3 in the nitrate response of Arabidopsis thaliana roots
    Elena A Vidal
    Fondo Nacional de Areas Prioritarias FONDAP Center for Genome Regulation, Departamento de Genetica Molecular y Microbiologia, Facultad de Ciencias Biologicas, Pontificia Universidad Catolica de Chile, 833101, Santiago, Chile
    Proc Natl Acad Sci U S A 110:12840-5. 2013
  4. pmc Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
    Elena A Vidal
    FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genetica Molecular y Microbiologia, Facultad de Ciencias Biologicas, Pontificia Universidad Catolica de Chile, Santiago 8331010, Chile
    BMC Genomics 14:701. 2013
  5. doi request reprint Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response of Arabidopsis thaliana roots
    Jose M Alvarez
    Departamento de Genetica Molecular y Microbiologia, Facultad de Ciencias Biologicas, FONDAP Center for Genome Regulation, Pontificia Universidad Catolica de Chile, Santiago 8331150, Chile Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biologicas, Millennium Nucleus Center for Plant Functional Genomics, Pontificia Universidad Catolica de Chile, Santiago 8331150, Chile
    Plant J 80:1-13. 2014
  6. pmc A deficiency in the flavoprotein of Arabidopsis mitochondrial complex II results in elevated photosynthesis and better growth in nitrogen-limiting conditions
    Daniela Fuentes
    Departamento de Genetica Molecular y Microbiologia, Facultad de Ciencias Biologicas, Pontificia Universidad Catolica de Chile, Casilla 114 D, Santiago, Chile
    Plant Physiol 157:1114-27. 2011
  7. pmc Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana
    Elena A Vidal
    Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Santiago 8331010, Chile
    Proc Natl Acad Sci U S A 107:4477-82. 2010
  8. pmc A holistic view of nitrogen acquisition in plants
    Tatiana Kraiser
    Center for Genome Regulation, Millennium Nucleus for Plant Functional Genomics, Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Santiago 8331010, Chile
    J Exp Bot 62:1455-66. 2011
  9. pmc Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana
    Elena A Vidal
    Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Santiago, Chile
    Wiley Interdiscip Rev Syst Biol Med 2:683-93. 2010
  10. doi request reprint Integration of local and systemic signaling pathways for plant N responses
    Jose M Alvarez
    FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Alameda 340, Santiago, Chile
    Curr Opin Plant Biol 15:185-91. 2012

Collaborators

Detail Information

Publications17

  1. doi request reprint Systems biology for enhanced plant nitrogen nutrition
    Rodrigo A Gutierrez
    FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Avenida Libertador Bernardo O Higgins 340, Santiago, Chile
    Science 336:1673-5. 2012
    ..A holistic view of plant N nutrition should open avenues to translate this knowledge into effective strategies to improve N-use efficiency and enhance crop production systems for more sustainable agricultural practices...
  2. doi request reprint Nitrogen control of developmental phase transitions in Arabidopsis thaliana
    Elena A Vidal
    FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Santiago, Chile
    J Exp Bot 65:5611-8. 2014
    ....
  3. pmc Systems approaches map regulatory networks downstream of the auxin receptor AFB3 in the nitrate response of Arabidopsis thaliana roots
    Elena A Vidal
    Fondo Nacional de Areas Prioritarias FONDAP Center for Genome Regulation, Departamento de Genetica Molecular y Microbiologia, Facultad de Ciencias Biologicas, Pontificia Universidad Catolica de Chile, 833101, Santiago, Chile
    Proc Natl Acad Sci U S A 110:12840-5. 2013
    ..Our systems approach has unraveled key components of the AFB3 regulatory network leading to changes in lateral root growth in response to nitrate. ..
  4. pmc Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
    Elena A Vidal
    FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genetica Molecular y Microbiologia, Facultad de Ciencias Biologicas, Pontificia Universidad Catolica de Chile, Santiago 8331010, Chile
    BMC Genomics 14:701. 2013
    ..Despite several genome-wide efforts to identify nitrate-regulated genes, no comprehensive study of the Arabidopsis root transcriptome under contrasting nitrate conditions has been carried out...
  5. doi request reprint Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response of Arabidopsis thaliana roots
    Jose M Alvarez
    Departamento de Genetica Molecular y Microbiologia, Facultad de Ciencias Biologicas, FONDAP Center for Genome Regulation, Pontificia Universidad Catolica de Chile, Santiago 8331150, Chile Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biologicas, Millennium Nucleus Center for Plant Functional Genomics, Pontificia Universidad Catolica de Chile, Santiago 8331150, Chile
    Plant J 80:1-13. 2014
    ..These results identify TGA1 and TGA4 as important regulatory factors of the nitrate response in Arabidopsis roots. ..
  6. pmc A deficiency in the flavoprotein of Arabidopsis mitochondrial complex II results in elevated photosynthesis and better growth in nitrogen-limiting conditions
    Daniela Fuentes
    Departamento de Genetica Molecular y Microbiologia, Facultad de Ciencias Biologicas, Pontificia Universidad Catolica de Chile, Casilla 114 D, Santiago, Chile
    Plant Physiol 157:1114-27. 2011
    ..Strikingly, SDH1-1/sdh1-1 seedlings grew considerably better in nitrogen-limiting conditions. Thus, a subtle metabolic alteration may lead to changes in important functions such as stomatal function and nitrogen assimilation...
  7. pmc Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana
    Elena A Vidal
    Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Santiago 8331010, Chile
    Proc Natl Acad Sci U S A 107:4477-82. 2010
    ....
  8. pmc A holistic view of nitrogen acquisition in plants
    Tatiana Kraiser
    Center for Genome Regulation, Millennium Nucleus for Plant Functional Genomics, Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Santiago 8331010, Chile
    J Exp Bot 62:1455-66. 2011
    ..Towards this goal, in this review the different mechanisms that plants utilize to maintain an adequate N supply are summarized and integrated...
  9. pmc Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana
    Elena A Vidal
    Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Santiago, Chile
    Wiley Interdiscip Rev Syst Biol Med 2:683-93. 2010
    ..Here, we provide an update on recent advances to identify the components involved in N sensing and signaling in Arabidopsis and their importance for the plant response to N...
  10. doi request reprint Integration of local and systemic signaling pathways for plant N responses
    Jose M Alvarez
    FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Alameda 340, Santiago, Chile
    Curr Opin Plant Biol 15:185-91. 2012
    ..In this review, we discuss recent advances toward understanding the mechanisms of local and systemic N responses and provide an integrated model for how these responses are orchestrated...
  11. doi request reprint Constructing simple biological networks for understanding complex high-throughput data in plants
    Tomás C Moyano
    Departamento de Genetica Molecular y Microbiologia, FONDAP Center for Genome Regulation, Millennium Nucleus for Plant Functional Genomics, Pontificia Universidad Catolica de Chile, Santiago, Chile
    Methods Mol Biol 1284:503-26. 2015
    ..The examples provided are based on Arabidopsis data, but the protocols presented should be readily applicable to any organism for which similar data can be obtained. ..
  12. pmc The rules of gene expression in plants: organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana
    Felipe F Aceituno
    Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Santiago, Chile
    BMC Genomics 9:438. 2008
    ..This huge amount of data offers a unique opportunity to infer the principles that govern the regulation of gene expression in plants...
  13. doi request reprint A systems view of nitrogen nutrient and metabolite responses in Arabidopsis
    Elena A Vidal
    Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Alameda 340, Santiago, Chile
    Curr Opin Plant Biol 11:521-9. 2008
    ..We discuss recent advances in this direction...
  14. doi request reprint Quorum sensing and indole-3-acetic acid degradation play a role in colonization and plant growth promotion of Arabidopsis thaliana by Burkholderia phytofirmans PsJN
    Ana Zúñiga
    Universidad Adolfo Ibáñez, Santiago, Chile
    Mol Plant Microbe Interact 26:546-53. 2013
    ..phytofirmans. The interplay between ethylene and auxin signaling was also confirmed by the response of the plant to a 1-aminocyclopropane-1-carboxylate deaminase bacterial mutant strain...
  15. pmc Discriminative local subspaces in gene expression data for effective gene function prediction
    Tomas Puelma
    Department of Molecular Genetics and Microbiology, FONDAP Center for Genome Regulation, Pontificia Universidad Catolica de Chile, Santiago, Chile
    Bioinformatics 28:2256-64. 2012
    ..However, these methods lack the simple biological intuition provided by co-expression networks (CNs), limiting their practical usefulness...
  16. doi request reprint Compatible GLRaV-3 viral infections affect berry ripening decreasing sugar accumulation and anthocyanin biosynthesis in Vitis vinifera
    Andrea Vega
    Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genetica Molecular y Microbiologia, Facultad de Ciencias Biologicas, Pontificia Universidad Catolica de Chile, Alameda 340, Santiago, Chile
    Plant Mol Biol 77:261-74. 2011
    ..Our results provide insight into commonly observed phenotypic alterations in virus infected vines and the molecular mechanisms associated with the plant response to the virus during berry ripening...