Wei Chen

Summary

Publications

  1. ncbi request reprint PseKNC: a flexible web server for generating pseudo K-tuple nucleotide composition
    Wei Chen
    School of Sciences, and Center for Genomics and Computational Biology, Hebei United University, Tangshan 063000, China Gordon Life Science Institute, Belmont, MA 02478, USA Electronic address
    Anal Biochem 456:53-60. 2014
  2. pmc iNuc-PhysChem: a sequence-based predictor for identifying nucleosomes via physicochemical properties
    Wei Chen
    Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan, China
    PLoS ONE 7:e47843. 2012
  3. pmc iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition
    Wei Chen
    Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan, China
    Nucleic Acids Res 41:e68. 2013
  4. pmc Identification of antioxidants from sequence information using naïve Bayes
    Peng Mian Feng
    School of Public Health, Hebei United University, Tangshan, China
    Comput Math Methods Med 2013:567529. 2013
  5. pmc Naïve Bayes classifier with feature selection to identify phage virion proteins
    Peng Mian Feng
    School of Public Health, Hebei United University, Tangshan 063000, China
    Comput Math Methods Med 2013:530696. 2013
  6. doi request reprint Prediction of replication origins by calculating DNA structural properties
    Wei Chen
    Department of Physics, School of Sciences, Hebei United University, Tangshan, China
    FEBS Lett 586:934-8. 2012
  7. ncbi request reprint iSS-PseDNC: Identifying Splicing Sites Using Pseudo Dinucleotide Composition
    Wei Chen
    Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan 063000, China Gordon Life Science Institute, Boston, MA 02478, USA
    Biomed Res Int 2014:623149. 2014
  8. ncbi request reprint iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition
    Shou Hui Guo
    Key Laboratory for Neuro Information of Ministry of Education, Center of Bioinformatics, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China, Gordon Life Science Institute, Belmont, Massachusetts, USA, Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan 063000, China and Center of Excellence in Genomic Medicine Research CEGMR, King Abdulaziz University, Jeddah, Saudi Arabia
    Bioinformatics 30:1522-9. 2014
  9. doi request reprint iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition
    Peng Mian Feng
    School of Public Health, Hebei United University, Tangshan 063000, China
    Anal Biochem 442:118-25. 2013
  10. ncbi request reprint Predicting the types of J-proteins using clustered amino acids
    Pengmian Feng
    School of Public Health, Hebei United University, Tangshan 063000, China
    Biomed Res Int 2014:935719. 2014

Collaborators

Detail Information

Publications12

  1. ncbi request reprint PseKNC: a flexible web server for generating pseudo K-tuple nucleotide composition
    Wei Chen
    School of Sciences, and Center for Genomics and Computational Biology, Hebei United University, Tangshan 063000, China Gordon Life Science Institute, Belmont, MA 02478, USA Electronic address
    Anal Biochem 456:53-60. 2014
    ..It is anticipated that the PseKNC web server will become a very useful tool in computational genomics and genome sequence analysis...
  2. pmc iNuc-PhysChem: a sequence-based predictor for identifying nucleosomes via physicochemical properties
    Wei Chen
    Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan, China
    PLoS ONE 7:e47843. 2012
    ..It is anticipated that iNuc-PhysChem may become a useful high throughput tool for both basic research and drug design...
  3. pmc iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition
    Wei Chen
    Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan, China
    Nucleic Acids Res 41:e68. 2013
    ..As a user-friendly web-server, iRSpot-PseDNC is freely accessible at http://lin.uestc.edu.cn/server/iRSpot-PseDNC...
  4. pmc Identification of antioxidants from sequence information using naïve Bayes
    Peng Mian Feng
    School of Public Health, Hebei United University, Tangshan, China
    Comput Math Methods Med 2013:567529. 2013
    ..These results suggest that the proposed method could be an effective and promising high-throughput method for antioxidant protein identification. ..
  5. pmc Naïve Bayes classifier with feature selection to identify phage virion proteins
    Peng Mian Feng
    School of Public Health, Hebei United University, Tangshan 063000, China
    Comput Math Methods Med 2013:530696. 2013
    ..These results indicate that the proposed method could be as an effective and promising high-throughput method in phage proteomics research...
  6. doi request reprint Prediction of replication origins by calculating DNA structural properties
    Wei Chen
    Department of Physics, School of Sciences, Hebei United University, Tangshan, China
    FEBS Lett 586:934-8. 2012
    ..The predictive performance of the jackknife cross-validation indicates that DNA bendability and cleavage intensity have the ability to describe core replication regions and our model is effective in ORI prediction...
  7. ncbi request reprint iSS-PseDNC: Identifying Splicing Sites Using Pseudo Dinucleotide Composition
    Wei Chen
    Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan 063000, China Gordon Life Science Institute, Boston, MA 02478, USA
    Biomed Res Int 2014:623149. 2014
    ....
  8. ncbi request reprint iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition
    Shou Hui Guo
    Key Laboratory for Neuro Information of Ministry of Education, Center of Bioinformatics, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China, Gordon Life Science Institute, Belmont, Massachusetts, USA, Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan 063000, China and Center of Excellence in Genomic Medicine Research CEGMR, King Abdulaziz University, Jeddah, Saudi Arabia
    Bioinformatics 30:1522-9. 2014
    ..Although some computational methods were proposed, most of them were species specific and neglected the intrinsic local structural properties that might play important roles in determining the nucleosome positioning on a DNA sequence...
  9. doi request reprint iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition
    Peng Mian Feng
    School of Public Health, Hebei United University, Tangshan 063000, China
    Anal Biochem 442:118-25. 2013
    ..As a user-friendly web server, iHSP-PseRAAAC is accessible to the public at http://lin.uestc.edu.cn/server/iHSP-PseRAAAC...
  10. ncbi request reprint Predicting the types of J-proteins using clustered amino acids
    Pengmian Feng
    School of Public Health, Hebei United University, Tangshan 063000, China
    Biomed Res Int 2014:935719. 2014
    ..To enhance the value of the practical applications of the proposed model, an online web server was developed and can be freely accessed. ..
  11. doi request reprint Identification of voltage-gated potassium channel subfamilies from sequence information using support vector machine
    Wei Chen
    Department of Physics, College of Sciences, Hebei United University, Tangshan 063000, China
    Comput Biol Med 42:504-7. 2012
    ..These results indicate that VKCPred can be efficiently used to identify and annotate voltage-gated K(+) channels' subfamilies. The VKCPred software and dataset are freely available at http://cobi.uestc.edu.cn/people/hlin/tools/VKCPred/...
  12. doi request reprint Prediction of ketoacyl synthase family using reduced amino acid alphabets
    Wei Chen
    Department of Physics, College of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan 063000, China
    J Ind Microbiol Biotechnol 39:579-84. 2012
    ....