Jake Y Chen

Summary

Publications

  1. ncbi Initial large-scale exploration of protein-protein interactions in human brain
    Jake Y Chen
    Myriad Proteomics, Inc, Salt Lake City, UT 84116, USA
    Proc IEEE Comput Soc Bioinform Conf 2:229-34. 2003
  2. ncbi Data mining in protein interactomics. Six computational research challenges and opportunities
    Jake Y Chen
    Indiana University School of Informatics, USA
    IEEE Eng Med Biol Mag 24:95-102. 2005
  3. ncbi ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining
    Tianxiao Huan
    School of Informatics, Indiana University Purdue University, Indianapolis, IN 46202, USA
    BMC Bioinformatics 9:S5. 2008
  4. ncbi Oracle Database 10g: a platform for BLAST search and Regular Expression pattern matching in life sciences
    Susie M Stephens
    Oracle Corporation, 10 Van de Graaff Drive, Burlington, MA 01803, USA
    Nucleic Acids Res 33:D675-9. 2005
  5. ncbi A systems biology approach to the study of cisplatin drug resistance in ovarian cancers
    Jake Y Chen
    Indiana University School of Informatics, Department of Computer and Information Science, Purdue University School of Science, Indianapolis, IN 46202, USA
    J Bioinform Comput Biol 5:383-405. 2007

Collaborators

  • Tianxiao Huan
  • Susie M Stephens
  • Barry M Trute
  • Marcel G Davidson
  • Shiby Thomas

Detail Information

Publications5

  1. ncbi Initial large-scale exploration of protein-protein interactions in human brain
    Jake Y Chen
    Myriad Proteomics, Inc, Salt Lake City, UT 84116, USA
    Proc IEEE Comput Soc Bioinform Conf 2:229-34. 2003
    ..We have classified and characterized all identified interactions based on Gene Ontology (GO) annotation of interacting loci. We have also described the "scale-free" topological structure of the network...
  2. ncbi Data mining in protein interactomics. Six computational research challenges and opportunities
    Jake Y Chen
    Indiana University School of Informatics, USA
    IEEE Eng Med Biol Mag 24:95-102. 2005
  3. ncbi ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining
    Tianxiao Huan
    School of Informatics, Indiana University Purdue University, Indianapolis, IN 46202, USA
    BMC Bioinformatics 9:S5. 2008
    ..A robust visual data analysis platform driven by database management systems to perform bi-directional data processing-to-visualizations with declarative querying capabilities is needed...
  4. ncbi Oracle Database 10g: a platform for BLAST search and Regular Expression pattern matching in life sciences
    Susie M Stephens
    Oracle Corporation, 10 Van de Graaff Drive, Burlington, MA 01803, USA
    Nucleic Acids Res 33:D675-9. 2005
    ..This article describes the Oracle Database 10g implementation of BLAST and Regular Expression Searches and provides case studies of their usage in bioinformatics. http://www.oracle.com/technology/software/index.html...
  5. ncbi A systems biology approach to the study of cisplatin drug resistance in ovarian cancers
    Jake Y Chen
    Indiana University School of Informatics, Department of Computer and Information Science, Purdue University School of Science, Indianapolis, IN 46202, USA
    J Bioinform Comput Biol 5:383-405. 2007
    ....