Daniel Ashlock

Summary

Affiliation: University of Guelph
Country: Canada

Publications

  1. pmc Promzea: a pipeline for discovery of co-regulatory motifs in maize and other plant species and its application to the anthocyanin and phlobaphene biosynthetic pathways and the Maize Development Atlas
    Christophe Liseron-Monfils
    Department of Plant Agriculture, University of Guelph, Guelph, Ontario, Canada
    BMC Plant Biol 13:42. 2013
  2. doi request reprint On the synthesis of DNA error correcting codes
    Daniel Ashlock
    Department of Mathematics and Statistics, University of Guelph, Guelph, Ontario, Canada
    Biosystems 110:1-8. 2012
  3. doi request reprint Evolution and instability in ring species complexes: an in silico approach to the study of speciation
    Daniel Ashlock
    Department of Mathematics and Statistics, MacNaughton Building, University of Guelph, 50 Stone Road East, Guelph, Ontario, Canada N1G 2W1
    J Theor Biol 264:1202-13. 2010
  4. pmc MULTI-K: accurate classification of microarray subtypes using ensemble k-means clustering
    Eun Youn Kim
    National Institute for Mathematical Sciences NIMS, Yuseong, Daejeon 305 340, Republic of Korea
    BMC Bioinformatics 10:260. 2009

Collaborators

  • Wendy Ashlock
  • Christophe Liseron-Monfils
  • Eun Youn Kim
  • Fran├žois Fauteux
  • Martina Stromvik
  • Manish N Raizada
  • Tim Lewis
  • Paul D McNicholas
  • Dougu Nam
  • Seon Young Kim

Detail Information

Publications4

  1. pmc Promzea: a pipeline for discovery of co-regulatory motifs in maize and other plant species and its application to the anthocyanin and phlobaphene biosynthetic pathways and the Maize Development Atlas
    Christophe Liseron-Monfils
    Department of Plant Agriculture, University of Guelph, Guelph, Ontario, Canada
    BMC Plant Biol 13:42. 2013
    ..The recent release of the maize genome (Zea mays L.) has facilitated in silico searches for regulatory motifs. Several algorithms exist to predict cis-acting elements, but none have been adapted for maize...
  2. doi request reprint On the synthesis of DNA error correcting codes
    Daniel Ashlock
    Department of Mathematics and Statistics, University of Guelph, Guelph, Ontario, Canada
    Biosystems 110:1-8. 2012
    ..Mathematical background results for the problem from multiple sources are summarized. A discussion of practical details that arise in application, including biological design and decoding, is also given in this study...
  3. doi request reprint Evolution and instability in ring species complexes: an in silico approach to the study of speciation
    Daniel Ashlock
    Department of Mathematics and Statistics, MacNaughton Building, University of Guelph, 50 Stone Road East, Guelph, Ontario, Canada N1G 2W1
    J Theor Biol 264:1202-13. 2010
    ..Using a problem with a simple fitness landscape, the K-max problem, ring species do not form. Instead, speciation around the ring occurs before ring closure as good genotypes become locally dominant...
  4. pmc MULTI-K: accurate classification of microarray subtypes using ensemble k-means clustering
    Eun Youn Kim
    National Institute for Mathematical Sciences NIMS, Yuseong, Daejeon 305 340, Republic of Korea
    BMC Bioinformatics 10:260. 2009
    ..However, most existing methods focus on clusters with compact shapes and do not reflect the geometric complexity of the high dimensional microarray clusters, which limits their performance...