Shoshana Wodak

Summary

Affiliation: The Hospital for Sick Children
Country: Canada

Publications

  1. pmc Multilocus loss of DNA methylation in individuals with mutations in the histone H3 lysine 4 demethylase KDM5C
    Daria Grafodatskaya
    Genetics and Genome Biology Program, Hospital for Sick Children, Toronto, ON, Canada
    BMC Med Genomics 6:1. 2013
  2. doi request reprint Challenges and rewards of interaction proteomics
    Shoshana J Wodak
    Hospital for Sick Children, 555 University Avenue, Toronto, Ontario M5G 1X8, Canada
    Mol Cell Proteomics 8:3-18. 2009
  3. doi request reprint High-throughput analyses and curation of protein interactions in yeast
    Shoshana J Wodak
    Molecular Structure and Function Program, Hospital for Sick Children, Toronto, ON, Canada
    Methods Mol Biol 759:381-406. 2011
  4. pmc Markov clustering versus affinity propagation for the partitioning of protein interaction graphs
    James Vlasblom
    Molecular Structure and Function Program, Hospital for Sick Children, Toronto, Ontario, Canada
    BMC Bioinformatics 10:99. 2009
  5. pmc Relating destabilizing regions to known functional sites in proteins
    Benoit H Dessailly
    Service de Conformation des Macromolécules Biologiques, Centre de Biologie Structurale et Bioinformatique, CP 263, Universite Libre de Bruxelles, Bruxelles, Belgium
    BMC Bioinformatics 8:141. 2007
  6. pmc Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets
    Guillaume Launay
    Laboratoire de Biochimie UMR CNRS 7654, Department of Biology, Ecole Polytechnique, 91128, Palaiseau, France
    BMC Bioinformatics 8:270. 2007

Collaborators

  • Shuye Pu
  • James Vlasblom
  • Daria Grafodatskaya
  • Benoit H Dessailly
  • Guillaume Launay
  • Rosanna Weksberg
  • Cindy Skinner
  • Stephen W Scherer
  • Andrei L Turinsky
  • Darci T Butcher
  • Jill Hamilton
  • Charles E Schwartz
  • Sarah J Goodman
  • Rageen Rajendram
  • Chunhua Zhao
  • Youliang Lou
  • Sana Choufani
  • Fatima E Abidi
  • Barian H Y Chung
  • James Stavropoulos
  • Yi an Chen
  • Carolyn A Bondy
  • Thomas Simonson
  • Raul Mendez
  • Marc F Lensink

Detail Information

Publications6

  1. pmc Multilocus loss of DNA methylation in individuals with mutations in the histone H3 lysine 4 demethylase KDM5C
    Daria Grafodatskaya
    Genetics and Genome Biology Program, Hospital for Sick Children, Toronto, ON, Canada
    BMC Med Genomics 6:1. 2013
    ..Identification of epigenetic alterations occurring in these disorders could shed light on molecular pathways relevant to neurodevelopment...
  2. doi request reprint Challenges and rewards of interaction proteomics
    Shoshana J Wodak
    Hospital for Sick Children, 555 University Avenue, Toronto, Ontario M5G 1X8, Canada
    Mol Cell Proteomics 8:3-18. 2009
    ..The challenges and rewards of interaction proteomics are reviewed here using as an example the latest comprehensive high throughput analyses of protein interactions in yeast...
  3. doi request reprint High-throughput analyses and curation of protein interactions in yeast
    Shoshana J Wodak
    Molecular Structure and Function Program, Hospital for Sick Children, Toronto, ON, Canada
    Methods Mol Biol 759:381-406. 2011
    ....
  4. pmc Markov clustering versus affinity propagation for the partitioning of protein interaction graphs
    James Vlasblom
    Molecular Structure and Function Program, Hospital for Sick Children, Toronto, Ontario, Canada
    BMC Bioinformatics 10:99. 2009
    ....
  5. pmc Relating destabilizing regions to known functional sites in proteins
    Benoit H Dessailly
    Service de Conformation des Macromolécules Biologiques, Centre de Biologie Structurale et Bioinformatique, CP 263, Universite Libre de Bruxelles, Bruxelles, Belgium
    BMC Bioinformatics 8:141. 2007
    ..In addition, to relate destabilizing regions to known functional sites, a novel benchmark consisting of a diverse set of hand-curated protein functional sites is derived...
  6. pmc Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets
    Guillaume Launay
    Laboratoire de Biochimie UMR CNRS 7654, Department of Biology, Ecole Polytechnique, 91128, Palaiseau, France
    BMC Bioinformatics 8:270. 2007
    ....