Michel Dumontier

Summary

Affiliation: Samuel Lunenfeld Research Institute
Country: Canada

Publications

  1. ncbi Armadillo: domain boundary prediction by amino acid composition
    Michel Dumontier
    Department of Biochemistry, University of Toronto, Toronto, Ont, Canada M5S 1A8
    J Mol Biol 350:1061-73. 2005
  2. pmc NBLAST: a cluster variant of BLAST for NxN comparisons
    Michel Dumontier
    Department of Biochemistry, University of Toronto, Toronto, Ontario, Canada M5S 1A8
    BMC Bioinformatics 3:13. 2002
  3. pmc Species-specific protein sequence and fold optimizations
    Michel Dumontier
    Department of Biochemistry, University of Toronto, Toronto, Ontario, M5S 1A8, Canada
    BMC Bioinformatics 3:39. 2002
  4. ncbi Hardware-accelerated protein identification for mass spectrometry
    Anish T Alex
    Department of Electrical and Computer Engineering, University of Toronto, 10 King s College Road, Toronto, Ontario, M5S 3G4 Canada
    Rapid Commun Mass Spectrom 19:833-7. 2005
  5. ncbi CO: A chemical ontology for identification of functional groups and semantic comparison of small molecules
    Howard J Feldman
    The Blueprint Initiative of the Samuel Lunenfeld Research Institute, Mount Sinai Hospital, 600 University Ave, Toronto, ON, Canada
    FEBS Lett 579:4685-91. 2005
  6. pmc SeqHound: biological sequence and structure database as a platform for bioinformatics research
    Katerina Michalickova
    Department of Biochemistry, University of Toronto, Toronto, Ontario, Canada M5S 1A8
    BMC Bioinformatics 3:32. 2002
  7. ncbi Computational methods for predicting protein-protein interactions
    Sylvain Pitre
    School of Computer Science, Carleton University, 5304 Herzberg Building, 1125 Colonel By Drive, K1S 5B6, Ottawa, Ontario, Canada
    Adv Biochem Eng Biotechnol 110:247-67. 2008
  8. doi Disruption of fungal cell wall by antifungal Echinacea extracts
    Nadereh Mir-Rashed
    Biology Department, Carleton University, Ottawa, Ontario, Canada
    Med Mycol 48:949-58. 2010
  9. pmc Domain-based small molecule binding site annotation
    Kevin A Snyder
    The Blueprint Initiative, Toronto ON, M5T 1K4, Canada
    BMC Bioinformatics 7:152. 2006

Collaborators

Detail Information

Publications9

  1. ncbi Armadillo: domain boundary prediction by amino acid composition
    Michel Dumontier
    Department of Biochemistry, University of Toronto, Toronto, Ont, Canada M5S 1A8
    J Mol Biol 350:1061-73. 2005
    ..As a first-line predictor, domain meta-predictors could yield improved results with Armadillo predictions...
  2. pmc NBLAST: a cluster variant of BLAST for NxN comparisons
    Michel Dumontier
    Department of Biochemistry, University of Toronto, Toronto, Ontario, Canada M5S 1A8
    BMC Bioinformatics 3:13. 2002
    ..We developed NBLAST as a cluster computer implementation of the BLAST family of sequence comparison programs for the purpose of generating pre-computed BLAST alignments and neighbour lists of NR sequences...
  3. pmc Species-specific protein sequence and fold optimizations
    Michel Dumontier
    Department of Biochemistry, University of Toronto, Toronto, Ontario, M5S 1A8, Canada
    BMC Bioinformatics 3:39. 2002
    ..In the largest study of its kind, we sought to identify and exploit the amino-acid signatures that make species-specific protein adaptation possible across 100 complete genomes...
  4. ncbi Hardware-accelerated protein identification for mass spectrometry
    Anish T Alex
    Department of Electrical and Computer Engineering, University of Toronto, 10 King s College Road, Toronto, Ontario, M5S 3G4 Canada
    Rapid Commun Mass Spectrom 19:833-7. 2005
    ..With faster FPGAs protein identifications from the human genome can be achieved in less than a second, and this makes it an ideal solution for a number of proteome-scale applications...
  5. ncbi CO: A chemical ontology for identification of functional groups and semantic comparison of small molecules
    Howard J Feldman
    The Blueprint Initiative of the Samuel Lunenfeld Research Institute, Mount Sinai Hospital, 600 University Ave, Toronto, ON, Canada
    FEBS Lett 579:4685-91. 2005
    ..This ontology will serve as a powerful tool for searching chemical databases and identifying key functional groups responsible for biological activities...
  6. pmc SeqHound: biological sequence and structure database as a platform for bioinformatics research
    Katerina Michalickova
    Department of Biochemistry, University of Toronto, Toronto, Ontario, Canada M5S 1A8
    BMC Bioinformatics 3:32. 2002
    ..SeqHound has been developed as an integrated biological sequence, taxonomy, annotation and 3-D structure database system. It provides a high-performance server platform for bioinformatics research in a locally-hosted environment...
  7. ncbi Computational methods for predicting protein-protein interactions
    Sylvain Pitre
    School of Computer Science, Carleton University, 5304 Herzberg Building, 1125 Colonel By Drive, K1S 5B6, Ottawa, Ontario, Canada
    Adv Biochem Eng Biotechnol 110:247-67. 2008
    ..For comparison, the conventional large-scale approaches to predict PPIs are also briefly discussed. The chapter concludes with a discussion of the limitations of both experimental and computational methods of determining PPIs...
  8. doi Disruption of fungal cell wall by antifungal Echinacea extracts
    Nadereh Mir-Rashed
    Biology Department, Carleton University, Ottawa, Ontario, Canada
    Med Mycol 48:949-58. 2010
    ....
  9. pmc Domain-based small molecule binding site annotation
    Kevin A Snyder
    The Blueprint Initiative, Toronto ON, M5T 1K4, Canada
    BMC Bioinformatics 7:152. 2006
    ....