Anthony P Fejes

Summary

Affiliation: British Columbia
Country: Canada

Publications

  1. pmc FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology
    Anthony P Fejes
    Genome Sciences Centre, BC Cancer Agency, Suite 100 570 West 7th Avenue, Vancouver, British Columbia, Canada
    Bioinformatics 24:1729-30. 2008
  2. doi request reprint Human variation database: an open-source database template for genomic discovery
    Anthony P Fejes
    Genome Sciences Centre, BC Cancer Agency, Suite 100 570 West 7th Avenue, Vancouver, British Columbia, Canada V5Z 4S6
    Bioinformatics 27:1155-6. 2011
  3. pmc Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding
    A Gordon Robertson
    BC Cancer Agency Genome Sciences Centre, Vancouver, Canada
    Genome Res 18:1906-17. 2008
  4. pmc Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline
    Alireza Hadj Khodabakhshi
    Genome Sciences Centre, BC Cancer Agency, Suite 100 570 West 7th Ave, Vancouver, British Columbia, V5Z 4S6, Canada
    BMC Bioinformatics 14:167. 2013
  5. pmc Recurrent targets of aberrant somatic hypermutation in lymphoma
    Alireza Hadj Khodabakhshi
    Michael Smith Genome Sciences Centre, Vancouver, British Columbia, Canada
    Oncotarget 3:1308-19. 2012
  6. pmc Mutations in EZH2 cause Weaver syndrome
    William T Gibson
    Department of Medical Genetics, University of British Columbia, Vancouver, Canada
    Am J Hum Genet 90:110-8. 2012
  7. pmc Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors
    Steven Jm Jones
    Genome Sciences Centre, British Columbia Cancer Agency, 570 West 7th Avenue, Vancouver, BC, V5Z 4S6, Canada
    Genome Biol 11:R82. 2010
  8. pmc Gene expression profiling of oxidative stress response of C. elegans aging defective AMPK mutants using massively parallel transcriptome sequencing
    Heesun Shin
    Genome Sciences Centre, BC Cancer Agency, Suite 100 570 West 7th Avenue, Vancouver, British Columbia, Canada V5Z 4S6
    BMC Res Notes 4:34. 2011
  9. ncbi request reprint A new algorithm for RNA secondary structure design
    Mirela Andronescu
    Department of Computer Science, University of British Columbia, Vancouver, BC, Canada V6T 1Z4
    J Mol Biol 336:607-24. 2004

Collaborators

Detail Information

Publications9

  1. pmc FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology
    Anthony P Fejes
    Genome Sciences Centre, BC Cancer Agency, Suite 100 570 West 7th Avenue, Vancouver, British Columbia, Canada
    Bioinformatics 24:1729-30. 2008
    ..Memory requirements are proportional to the number of sequencing reads analyzed; typically 4 GB permits processing of up to 40 million reads...
  2. doi request reprint Human variation database: an open-source database template for genomic discovery
    Anthony P Fejes
    Genome Sciences Centre, BC Cancer Agency, Suite 100 570 West 7th Avenue, Vancouver, British Columbia, Canada V5Z 4S6
    Bioinformatics 27:1155-6. 2011
    ....
  3. pmc Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding
    A Gordon Robertson
    BC Cancer Agency Genome Sciences Centre, Vancouver, Canada
    Genome Res 18:1906-17. 2008
    ....
  4. pmc Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline
    Alireza Hadj Khodabakhshi
    Genome Sciences Centre, BC Cancer Agency, Suite 100 570 West 7th Ave, Vancouver, British Columbia, V5Z 4S6, Canada
    BMC Bioinformatics 14:167. 2013
    ....
  5. pmc Recurrent targets of aberrant somatic hypermutation in lymphoma
    Alireza Hadj Khodabakhshi
    Michael Smith Genome Sciences Centre, Vancouver, British Columbia, Canada
    Oncotarget 3:1308-19. 2012
    ..In particular, we have identified 32 novel targets that show same or higher level of aSHM activity than genes previously reported. Amongst these novel targets, 22 genes showed a significant correlation between mRNA abundance and aSHM...
  6. pmc Mutations in EZH2 cause Weaver syndrome
    William T Gibson
    Department of Medical Genetics, University of British Columbia, Vancouver, Canada
    Am J Hum Genet 90:110-8. 2012
    ..Sanger sequencing of EZH2 in a third classically-affected proband identified a third de novo mutation in this gene. These data show that mutations in EZH2 cause Weaver syndrome...
  7. pmc Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors
    Steven Jm Jones
    Genome Sciences Centre, British Columbia Cancer Agency, 570 West 7th Avenue, Vancouver, BC, V5Z 4S6, Canada
    Genome Biol 11:R82. 2010
    ..We investigated the utility of massively parallel sequencing to characterize an adenocarcinoma of the tongue, before and after treatment...
  8. pmc Gene expression profiling of oxidative stress response of C. elegans aging defective AMPK mutants using massively parallel transcriptome sequencing
    Heesun Shin
    Genome Sciences Centre, BC Cancer Agency, Suite 100 570 West 7th Avenue, Vancouver, British Columbia, Canada V5Z 4S6
    BMC Res Notes 4:34. 2011
    ..abstract:..
  9. ncbi request reprint A new algorithm for RNA secondary structure design
    Mirela Andronescu
    Department of Computer Science, University of British Columbia, Vancouver, BC, Canada V6T 1Z4
    J Mol Biol 336:607-24. 2004
    ..The RNA-SSD software is publically available under the name of RNA Designer at the RNASoft website (www.rnasoft.ca)...