M A Van Sluys

Summary

Country: Brazil

Publications

  1. pmc Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads
    Armelle Darrasse
    INRA, UMR1345 Institut de Recherche en Horticulture et Semences, F 49071, Beaucouze, France
    BMC Genomics 14:761. 2013
  2. pmc Building the sugarcane genome for biotechnology and identifying evolutionary trends
    Nathalia de Setta
    Departamento de Botânica Instituto de Biociências, Universidade de Sao Paulo, Rua do Matão 277, São Paulo 05508 090, SP, Brazil
    BMC Genomics 15:540. 2014
  3. pmc Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains
    Alessandro M Varani
    Genome and Transposable Elements Laboratory, Departamento de Botanica, Instituto de Biociencias, Universidade de Sao Paulo, Sao Paulo, SP, Brazil
    Genet Mol Biol 35:149-52. 2012
  4. pmc A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers
    Alessandra C Palhares
    Departamento de Genetica, Escola Superior de Agricultura Luiz de Queiroz, Universidade de Sao Paulo, 13418 900, Piracicaba, Brazil
    BMC Genet 13:51. 2012
  5. pmc Diversification of hAT transposase paralogues in the sugarcane genome
    Erika M de Jesus
    GaTE Lab, Departamento de Botanica, Instituto de Biociencias, Universidade de Sao Paulo, Rua do Matao, 277, Sala 153, Butanta, 05508 090, Sao Paulo, SP, Brazil
    Mol Genet Genomics 287:205-19. 2012
  6. pmc Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns
    Douglas S Domingues
    GaTE Lab, Depto, de Botânica, Inst, de Biociências, Universidade de Sao Paulo, Rua do Matao, 277, 05508 090 São Paulo, Brazil
    BMC Genomics 13:137. 2012
  7. pmc Characterization of new IS elements and studies of their dispersion in two subspecies of Leifsonia xyli
    Marcelo M Zerillo
    Departamento de Botanica, Instituto de Biociencias, Universidade de Sao Paulo, Rua do Matao, 277, 05508 900, Sao Paulo, SP, Brazil
    BMC Microbiol 8:127. 2008
  8. pmc Radiation of the Tnt1 retrotransposon superfamily in three Solanaceae genera
    Maria E Manetti
    GaTE Lab, Departamento de Botanica, Instituto de Biociencias, Universidade de São Paulo Departamento de Botânica, Sao Paulo, SP Brasil
    BMC Evol Biol 7:34. 2007
  9. pmc Multiple invasions of Gypsy and Micropia retroelements in genus Zaprionus and melanogaster subgroup of the genus Drosophila
    Nathalia de Setta
    Department of Biology, UNESP Sao Paulo State University, Sao Jose do Rio Preto, SP, Brazil
    BMC Evol Biol 9:279. 2009
  10. pmc Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
    M A Van Sluys
    Instituto de Biociência, Universidade de Sao Paulo, R do Matão 227, 05508 900 Sao Paulo, Brazil
    J Bacteriol 185:1018-26. 2003

Collaborators

  • D A Haake
  • Marilis do Valle Marques
  • A J G Simpson
  • Andrew H Paterson
  • A D'Hont
  • G H Goldman
  • H Chen
  • F F White
  • Renato Vicentini
  • R A Hartskeerl
  • M Rossi
  • Pak Leung Ho
  • Michel Vincentz
  • P Sommer
  • Nathalia de Setta
  • Douglas S Domingues
  • A L T O Nascimento
  • Armelle Darrasse
  • Erika M de Jesus
  • Alessandro M Varani
  • Guilherme M Q Cruz
  • Alessandra C Palhares
  • L E A Camargo
  • M C Oliveira
  • J C Setubal
  • C B Monteiro-Vitorello
  • Claudia B Monteiro-Vitorello
  • Marcelo M Zerillo
  • Maria E Manetti
  • E A L Martins
  • S Verjovski-Almeida
  • M V Marques
  • C F M Menck
  • H El-Dorry
  • L R Furlan
  • J P Kitajima
  • M I T Ferro
  • S M Tsai
  • L L Coutinho
  • E G M Lemos
  • J A Ferro
  • M V F Lemos
  • Paloma Mieko Sato
  • Fábio Tebaldi Silveira Nogueira
  • Carlos Takeshi Hotta
  • Rodrigo Fandiño de Andrade
  • Andréia Prata Vieira
  • Alessandro de Mello Varani
  • Mariane de Mendonça Vilela
  • Hélène Bergès
  • Paula Cristina Gasperazzo Turrini
  • Cushla Jane Metcalfe
  • João Paulo Kitajima
  • Luiz Eduardo Del Bem
  • Monalisa Sampaio Carneiro
  • Antonio Augusto Franco Garcia
  • Carolina Gimiliani Lembke
  • Kátia Castanho Scortecci
  • Sideny Lima Nunes
  • Claudia Barros Monteiro-Vitorello
  • Claudio Benicio Cardoso-Silva
  • Edgar Andrés Ochoa Cruz
  • Milton Yutaka Nishiyama
  • Roberta Alvares Campos
  • Glaucia Mendes Souza
  • Anete Pereira de Souza
  • Changsoo Kim
  • Sonia Vautrin
  • Guilherme Marcelo Queiroga Cruz
  • A C R da Silva
  • Adilson Silva da Trindade
  • Tatiana Caroline Silveira Corrêa
  • Christian Vernière
  • Stéphane Poussier
  • Olivier Pruvost
  • Boris Szurek
  • Sophie Bonneau
  • Isabelle Robène-Soustrade
  • Alejandra Muñoz
  • Valerie Verdier
  • Isabelle Pieretti
  • Sébastien Carrère
  • Fabien Guérin
  • Arnaud Indiana
  • Ralf Koebnik
  • Endrick Guy
  • Chrystelle Brin
  • Karine Durand
  • Lionel Gagnevin
  • Monique Royer

Detail Information

Publications17

  1. pmc Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads
    Armelle Darrasse
    INRA, UMR1345 Institut de Recherche en Horticulture et Semences, F 49071, Beaucouze, France
    BMC Genomics 14:761. 2013
    ..Xanthomonas fuscans subsp. fuscans (Xff) is one of the causal agents of common bacterial blight of bean. In this study, the complete genome sequence of strain Xff 4834-R was determined and compared to other Xanthomonas genome sequences...
  2. pmc Building the sugarcane genome for biotechnology and identifying evolutionary trends
    Nathalia de Setta
    Departamento de Botânica Instituto de Biociências, Universidade de Sao Paulo, Rua do Matão 277, São Paulo 05508 090, SP, Brazil
    BMC Genomics 15:540. 2014
    ..Here we release the largest and most diverse set of sugarcane genome sequences to date, as part of an on-going initiative to provide a sugarcane genomic information resource, with the ultimate goal of producing a gold standard genome...
  3. pmc Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains
    Alessandro M Varani
    Genome and Transposable Elements Laboratory, Departamento de Botanica, Instituto de Biociencias, Universidade de Sao Paulo, Sao Paulo, SP, Brazil
    Genet Mol Biol 35:149-52. 2012
    ..It is available from web site http://www.xylella.lncc.br...
  4. pmc A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers
    Alessandra C Palhares
    Departamento de Genetica, Escola Superior de Agricultura Luiz de Queiroz, Universidade de Sao Paulo, 13418 900, Piracicaba, Brazil
    BMC Genet 13:51. 2012
    ....
  5. pmc Diversification of hAT transposase paralogues in the sugarcane genome
    Erika M de Jesus
    GaTE Lab, Departamento de Botanica, Instituto de Biociencias, Universidade de Sao Paulo, Rua do Matao, 277, Sala 153, Butanta, 05508 090, Sao Paulo, SP, Brazil
    Mol Genet Genomics 287:205-19. 2012
    ..Taken together, these findings permit to follow the diversification of some hAT transposase paralogues in sugarcane, aggregating knowledge about the co-evolution of transposons and their host genomes...
  6. pmc Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns
    Douglas S Domingues
    GaTE Lab, Depto, de Botânica, Inst, de Biociências, Universidade de Sao Paulo, Rua do Matao, 277, 05508 090 São Paulo, Brazil
    BMC Genomics 13:137. 2012
    ..It is therefore crucial to understand their contribution to the genome and transcriptome, however a detailed study of LTR-RTs in sugarcane has not been previously carried out...
  7. pmc Characterization of new IS elements and studies of their dispersion in two subspecies of Leifsonia xyli
    Marcelo M Zerillo
    Departamento de Botanica, Instituto de Biociencias, Universidade de Sao Paulo, Rua do Matao, 277, 05508 900, Sao Paulo, SP, Brazil
    BMC Microbiol 8:127. 2008
    ..Since IS elements are largely reported as an important source of bacterial genome diversification and nothing is known about their role in chromosome architecture of L. xyli, a comparative analysis of Lxc and Lxx elements was performed...
  8. pmc Radiation of the Tnt1 retrotransposon superfamily in three Solanaceae genera
    Maria E Manetti
    GaTE Lab, Departamento de Botanica, Instituto de Biociencias, Universidade de São Paulo Departamento de Botânica, Sao Paulo, SP Brasil
    BMC Evol Biol 7:34. 2007
    ..The study presented here was conducted to characterise Tnt1-related sequences in 20 wild species of Solanum and five cultivars of Solanum tuberosum...
  9. pmc Multiple invasions of Gypsy and Micropia retroelements in genus Zaprionus and melanogaster subgroup of the genus Drosophila
    Nathalia de Setta
    Department of Biology, UNESP Sao Paulo State University, Sao Jose do Rio Preto, SP, Brazil
    BMC Evol Biol 9:279. 2009
    ..Among these elements, the Gypsy and the Micropia retroelements were chosen for screening in seven species of the two Zaprionus subgenera, Anaprionus and Zaprionus...
  10. pmc Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
    M A Van Sluys
    Instituto de Biociência, Universidade de Sao Paulo, R do Matão 227, 05508 900 Sao Paulo, Brazil
    J Bacteriol 185:1018-26. 2003
    ..We conclude that these two organisms have identical metabolic functions and are likely to use a common set of genes in plant colonization and pathogenesis, permitting convergence of functional genomic strategies...
  11. ncbi request reprint Comparative genomic analysis of plant-associated bacteria
    M A Van Sluys
    Depto de Botanica, Instituto de Biociencias, Universidade de Sao Paulo, Brazil
    Annu Rev Phytopathol 40:169-89. 2002
    ..A total of 19 genes not involved in housekeeping functions were found common to all these bacteria...
  12. pmc Genome features of Leptospira interrogans serovar Copenhageni
    A L T O Nascimento
    Centro de Biotecnologia, Instituto Butantan, Sao Paulo, SP, Brazil
    Braz J Med Biol Res 37:459-77. 2004
    ..Genes related to toxins, lipoproteins and several surface-exposed proteins may facilitate a better understanding of the Leptospira pathogenesis and may serve as potential candidates for vaccine...
  13. ncbi request reprint Comparison of the genomes of two Xanthomonas pathogens with differing host specificities
    A C R da Silva
    Departamento de Bioquimica, Instituto de Quimica, Av Prof Lineu Prestes 748, Sao Paulo, SP, Brazil
    Nature 417:459-63. 2002
    ..We identified several groups of strain-specific genes, and on the basis of these groups we propose mechanisms that may explain the differing host specificities and pathogenic processes...
  14. pmc Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis
    A L T O Nascimento
    Centro de Biotecnologia, Instituto Butantan, Universidade de Sao Paulo, Sao Paulo, Brazil
    J Bacteriol 186:2164-72. 2004
    ..Hundreds of genes encoding surface-exposed lipoproteins and transmembrane outer membrane proteins were identified as candidates for development of vaccines for the prevention of leptospirosis...
  15. ncbi request reprint Genomic distribution and characterization of EST-derived resistance gene analogs (RGAs) in sugarcane
    M Rossi
    Departamento de Botanica, Instituto de Biociencias, Universidade de Sao Paulo, Rua do Matão 277, 055080 090 SP, Sao Paulo, Brazil
    Mol Genet Genomics 269:406-19. 2003
    ....
  16. ncbi request reprint Comparative analysis of Mutator -like transposases in sugarcane
    M Rossi
    Departamento de Botanica, Instituto de Biociencias, Universidade de Sao Paulo, Rua do Matão 277, 05508 090 SP, Sao Paulo, Brazil
    Mol Genet Genomics 272:194-203. 2004
    ..The predicted products of some sugarcane mudrA -like transcripts contain both a DNA-binding domain and a transposase catalytic-site motif, supporting the idea that an active Mu system exists in this hybrid genome...
  17. ncbi request reprint Retrolyc1 subfamilies defined by different U3 LTR regulatory regions in the Lycopersicon genus
    P G Araujo
    , , Brazil
    Mol Genet Genomics 266:35-41. 2001
    ..Transient expression analysis suggests that Retrolyc1A is a transcriptionally active family, and that the repeated motifs found in its U3 region are important transcriptional regulatory elements...