Raoul Jp Bonnal

Summary

Publications

  1. pmc Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments
    Ricardo H Ramirez-Gonzalez
    The Sainsbury Laboratory, Norwich Research Park, Colney Lane, Norwich, NR4 7UH, UK
    Source Code Biol Med 7:6. 2012
  2. pmc The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
    Toshiaki Katayama
    Database Center for Life Science, Research Organization of Information and Systems, 2 11 16, Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Biomed Semantics 4:6. 2013
  3. pmc The Ruby UCSC API: accessing the UCSC genome database using Ruby
    Hiroyuki Mishima
    Department of Human Genetics, Nagasaki University Graduate School of Biomedical Sciences, 1 12 4 Sakamoto, Nagasaki, Nagasaki, 852 8523, Japan
    BMC Bioinformatics 13:240. 2012
  4. pmc Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics
    Raoul J P Bonnal
    Integrative Biology Program, Istituto Nazionale Genetica Molecolare, Milan 20122, Italy
    Bioinformatics 28:1035-7. 2012
  5. pmc The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
    Toshiaki Katayama
    Database Center for Life Science, Research Organization of Information and Systems, 2 11 16 Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Biomed Semantics 2:4. 2011

Collaborators

Detail Information

Publications5

  1. pmc Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments
    Ricardo H Ramirez-Gonzalez
    The Sainsbury Laboratory, Norwich Research Park, Colney Lane, Norwich, NR4 7UH, UK
    Source Code Biol Med 7:6. 2012
    ..abstract:..
  2. pmc The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
    Toshiaki Katayama
    Database Center for Life Science, Research Organization of Information and Systems, 2 11 16, Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Biomed Semantics 4:6. 2013
    ....
  3. pmc The Ruby UCSC API: accessing the UCSC genome database using Ruby
    Hiroyuki Mishima
    Department of Human Genetics, Nagasaki University Graduate School of Biomedical Sciences, 1 12 4 Sakamoto, Nagasaki, Nagasaki, 852 8523, Japan
    BMC Bioinformatics 13:240. 2012
    ..A simple application programming interface (API) in a scripting language aimed at the biologist was however not yet available. Here, we present the Ruby UCSC API, a library to access the UCSC genome database using Ruby...
  4. pmc Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics
    Raoul J P Bonnal
    Integrative Biology Program, Istituto Nazionale Genetica Molecolare, Milan 20122, Italy
    Bioinformatics 28:1035-7. 2012
    ..Biogem, with its targeted modular and decentralized approach, software generator, tools and tight web integration, is an improved general model for scaling up collaborative open source software development in bioinformatics...
  5. pmc The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
    Toshiaki Katayama
    Database Center for Life Science, Research Organization of Information and Systems, 2 11 16 Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Biomed Semantics 2:4. 2011
    ..abstract:..