Jon Bohlin

Summary

Publications

  1. pmc Exploration of multivariate analysis in microbial coding sequence modeling
    Tahir Mehmood
    Biostatistics, Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, Aas, Norway
    BMC Bioinformatics 13:97. 2012
  2. pmc Growth comparison of several Escherichia coli strains exposed to various concentrations of lactoferrin using linear spline regression
    Camilla Sekse
    Norwegian School of Veterinary Science, EPI Centre, Department of Food Safety and Infection Biolog, P, O, Box 8146 Dep, N 0033, Oslo, Norway
    Microb Inform Exp 2:5. 2012
  3. pmc Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands
    Jon Bohlin
    Norwegian School of Veterinary Science, Epicentre, Department of Food Safety and Infection Biology, Ullevålsveien 72, Oslo, Norway
    BMC Genomics 13:66. 2012
  4. pmc Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods
    Jon Bohlin
    Norwegian School of Veterinary Science, Department of Food Safety and Infection Biology, EpiCenter, Ullevålsveien 72, PO Box 8146 Dep, NO 0033 Oslo, Norway
    BMC Evol Biol 10:249. 2010
  5. doi request reprint Genomic signatures in microbes -- properties and applications
    Jon Bohlin
    Department of Food Safety and Infection Biology, Norwegian School of Veterinary Science, Oslo, Norway
    ScientificWorldJournal 11:715-25. 2011
  6. pmc Analysis of intra-genomic GC content homogeneity within prokaryotes
    Jon Bohlin
    Norwegian School of Veterinary Science, Department of Food Safety and Infection Biology, Ullevålsveien 72, P, O, Box 8146 Dep, NO 0033 Oslo, Norway
    BMC Genomics 11:464. 2010
  7. pmc Examination of genome homogeneity in prokaryotes using genomic signatures
    Jon Bohlin
    Department of Food Safety, Norwegian School of Veterinary Science, Oslo, Norway
    PLoS ONE 4:e8113. 2009
  8. pmc Analysis of genomic signatures in prokaryotes using multinomial regression and hierarchical clustering
    Jon Bohlin
    Norwegian School of Veterinary Science, Oslo, Norway
    BMC Genomics 10:487. 2009
  9. pmc Investigations of oligonucleotide usage variance within and between prokaryotes
    Jon Bohlin
    Norwegian School of Veterinary Science, Oslo, Norway
    PLoS Comput Biol 4:e1000057. 2008
  10. pmc Reliability and applications of statistical methods based on oligonucleotide frequencies in bacterial and archaeal genomes
    Jon Bohlin
    Norwegian School of Veterinary Science, P O Box 8146 Dep, N 0033 Oslo, Norway
    BMC Genomics 9:104. 2008

Collaborators

Detail Information

Publications19

  1. pmc Exploration of multivariate analysis in microbial coding sequence modeling
    Tahir Mehmood
    Biostatistics, Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, Aas, Norway
    BMC Bioinformatics 13:97. 2012
    ..Comparisons between the methods were performed on DNA, codon and protein sequences with highly conserved genes taken from several species with different genomic properties...
  2. pmc Growth comparison of several Escherichia coli strains exposed to various concentrations of lactoferrin using linear spline regression
    Camilla Sekse
    Norwegian School of Veterinary Science, EPI Centre, Department of Food Safety and Infection Biolog, P, O, Box 8146 Dep, N 0033, Oslo, Norway
    Microb Inform Exp 2:5. 2012
    ..abstract:..
  3. pmc Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands
    Jon Bohlin
    Norwegian School of Veterinary Science, Epicentre, Department of Food Safety and Infection Biology, Ullevålsveien 72, Oslo, Norway
    BMC Genomics 13:66. 2012
    ..We analyzed the differences in information capacity between prokaryotic chromosomes, genomic islands (GI), phages, and plasmids. Relative entropy was estimated using the Kullback-Leibler measure...
  4. pmc Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods
    Jon Bohlin
    Norwegian School of Veterinary Science, Department of Food Safety and Infection Biology, EpiCenter, Ullevålsveien 72, PO Box 8146 Dep, NO 0033 Oslo, Norway
    BMC Evol Biol 10:249. 2010
    ....
  5. doi request reprint Genomic signatures in microbes -- properties and applications
    Jon Bohlin
    Department of Food Safety and Infection Biology, Norwegian School of Veterinary Science, Oslo, Norway
    ScientificWorldJournal 11:715-25. 2011
    ..Most attempts so far have mainly focused on correlations from in silico data. This mini-review seeks to summarize possible influences shaping the genomic signature and to survey a set of applications...
  6. pmc Analysis of intra-genomic GC content homogeneity within prokaryotes
    Jon Bohlin
    Norwegian School of Veterinary Science, Department of Food Safety and Infection Biology, Ullevålsveien 72, P, O, Box 8146 Dep, NO 0033 Oslo, Norway
    BMC Genomics 11:464. 2010
    ..We utilize a new quantity GCVAR, the intra-genomic GC content variability with respect to the average GC content of the total genome. A low GCVAR indicates intra-genomic GC homogeneity and high GCVAR heterogeneity...
  7. pmc Examination of genome homogeneity in prokaryotes using genomic signatures
    Jon Bohlin
    Department of Food Safety, Norwegian School of Veterinary Science, Oslo, Norway
    PLoS ONE 4:e8113. 2009
    ....
  8. pmc Analysis of genomic signatures in prokaryotes using multinomial regression and hierarchical clustering
    Jon Bohlin
    Norwegian School of Veterinary Science, Oslo, Norway
    BMC Genomics 10:487. 2009
    ..The regression model included the cluster groups as the response variable with AT content, phyla, growth temperature, selective pressure, habitat, sequence size, oxygen requirement and pathogenicity as predictors...
  9. pmc Investigations of oligonucleotide usage variance within and between prokaryotes
    Jon Bohlin
    Norwegian School of Veterinary Science, Oslo, Norway
    PLoS Comput Biol 4:e1000057. 2008
    ....
  10. pmc Reliability and applications of statistical methods based on oligonucleotide frequencies in bacterial and archaeal genomes
    Jon Bohlin
    Norwegian School of Veterinary Science, P O Box 8146 Dep, N 0033 Oslo, Norway
    BMC Genomics 9:104. 2008
    ..Additionally, the reliability of the methods was tested by comparing both real and random genomic DNA...
  11. pmc The highly virulent 2006 Norwegian EHEC O103:H25 outbreak strain is related to the 2011 German O104:H4 outbreak strain
    Trine M L'abée-Lund
    Department of Food Safety and Infection Biology, Norwegian School of Veterinary Science, Oslo, Norway
    PLoS ONE 7:e31413. 2012
    ..The contaminated food most likely contained a mixture of E. coli O103:H25 cells with either one of the phages...
  12. doi request reprint Applying fractal analysis to heart rate time series of sheep experiencing pain
    Solveig M Stubsjøen
    Norwegian School of Veterinary Science, Department of Production Animal Clinical Sciences, P O Box 8146 Dep, NO 0033 Oslo, Norway
    Physiol Behav 101:74-80. 2010
    ..DFA of heart rate time series may be a useful method to evaluate the progressive shift of cardiac regulation toward sympathetic activation and vagal withdrawal produced by pain or negative emotional responses such as fear...
  13. pmc Molecular epidemiology of salmonid alphavirus (SAV) subtype 3 in Norway
    Mona D Jansen
    Center for Epidemiology and Biostatistics, Norwegian School of Veterinary Science, Oslo, Norway
    Virol J 7:188. 2010
    ..The analyses were mainly based on partial sequences from the E2 gene. For some samples, additional partial 6 K and nsP3 gene sequences were available...
  14. pmc Amino Acid Usage Is Asymmetrically Biased in AT- and GC-Rich Microbial Genomes
    Jon Bohlin
    Centre for Epidemiology and Biostatistics, Department of Food Safety and Infection Biology, Norwegian School of Veterinary Science, Oslo, Norway
    PLoS ONE 8:e69878. 2013
    ....
  15. pmc Stretches of alternating pyrimidine/purines and purines are respectively linked with pathogenicity and growth temperature in prokaryotes
    Jon Bohlin
    Norwegian School of Veterinary Science, Oslo, Norway
    BMC Genomics 10:346. 2009
    ....
  16. doi request reprint Immune responses in Atlantic salmon (Salmo salar) following protective vaccination against infectious salmon anemia (ISA) and subsequent ISA virus infection
    Astrid Lauscher
    Department of Food Safety and Infection Biology, The Norwegian School of Veterinary Science, P O 8146 Dep, N 0033 Oslo, Norway
    Vaccine 29:6392-401. 2011
    ..This study furthers the knowledge about vaccine efficacy and vaccine-induced immunity to ISAV challenge in Atlantic salmon...
  17. doi request reprint Using an insect model to assess correlation between temperature and virulence in Bacillus weihenstephanensis and Bacillus cereus
    Lotte Stenfors Arnesen
    Department of Food Safety and Infection Biology, Norwegian School of Veterinary Science, Section for Food Safety, Oslo, Norway
    FEMS Microbiol Lett 317:196-202. 2011
    ..In addition, we found that G. mellonella is a useful model for studies of the psychrotolerant species of the B. cereus group, suggesting that insects might be an ecological growth niche for several members of this bacterial group...
  18. doi request reprint Peripheral temperature drop in response to anticipation and consumption of a signaled palatable reward in laying hens (Gallus domesticus)
    Randi Oppermann Moe
    Norwegian School of Veterinary Science, Box 8146 Dep, NO 0033 Oslo, Norway
    Physiol Behav 106:527-33. 2012
    ..Substantial temperature responses due to diet-induced thermogenesis were found, further emphasizing a cautious interpretation of altered comb temperature in studies of animal welfare...
  19. pmc Molecular characterization of Mycobacterium bovis isolates from Ethiopian cattle
    Demelash Biffa
    Center for Epidemiology and Biostatistics, Norwegian School of Veterinary Science, PO Box 8146, N 0033, Oslo, Norway
    BMC Vet Res 6:28. 2010
    ..bovis population was also developed. The study was conducted from July 2006 to January 2007 in cattle slaughtered at five representative abattoirs in Ethiopia...