Philippe N Bertin

Summary

Publications

  1. pmc Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans
    Sandrine Koechler
    UMR7156 Génétique Moléculaire, Génomique et Microbiologie, CNRS Universite de Strasbourg, 28 rue Goethe, 67000 Strasbourg, France
    BMC Microbiol 10:53. 2010
  2. pmc Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans
    Jessica Cleiss-Arnold
    Département Microorganismes, UMR7156 Université de Strasbourg CNRS, Genetique Moleculaire, Génomique et Microbiologie, 28 rue Goethe, 67083 Strasbourg Cedex, France
    BMC Genomics 11:709. 2010
  3. pmc Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26
    Jérémy Andres
    Laboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156 CNRS Université de Strasbourg, Strasbourg, France
    Genome Biol Evol 5:934-53. 2013
  4. pmc Subinhibitory arsenite concentrations lead to population dispersal in Thiomonas sp
    Marie Marchal
    Genetique Moleculaire, Génomique et Microbiologie, UMR7156 CNRS and Université de Strasbourg, Strasbourg, France
    PLoS ONE 6:e23181. 2011
  5. pmc Structure, function, and evolution of the Thiomonas spp. genome
    Florence Arsène-Ploetze
    Genetique Moleculaire, Génomique et Microbiologie, UMR7156 CNRS and Université de Strasbourg, Strasbourg, France
    PLoS Genet 6:e1000859. 2010
  6. pmc Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics
    Philippe N Bertin
    Genetique Moleculaire, Génomique et Microbiologie, UMR7156 CNRS and UdS, Strasbourg, France
    ISME J 5:1735-47. 2011
  7. pmc A tale of two oxidation states: bacterial colonization of arsenic-rich environments
    Daniel Muller
    Genetique Moleculaire, Génomique et Microbiologie, UMR7156 CNRS and Université Louis Pasteur, Strasbourg, France
    PLoS Genet 3:e53. 2007
  8. pmc Carbon and arsenic metabolism in Thiomonas strains: differences revealed diverse adaptation processes
    Christopher G Bryan
    Genetique Moleculaire, Génomique et Microbiologie, UMR 7156 CNRS and Université de Strasbourg, Strasbourg, France
    BMC Microbiol 9:127. 2009
  9. doi request reprint Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data
    Stephanie Weiss
    Genetique Moleculaire, Génomique et Microbiologie, Universite Louis Pasteur, Strasbourg, France
    Biochimie 91:192-203. 2009
  10. pmc In situ proteo-metabolomics reveals metabolite secretion by the acid mine drainage bio-indicator, Euglena mutabilis
    David Halter
    UMR7156 Université de Strasbourg CNRS, Genetique Moleculaire, Génomique et Microbiologie, Département Micro organismes, Génomes, Environnement, Strasbourg, France
    ISME J 6:1391-402. 2012

Collaborators

Detail Information

Publications18

  1. pmc Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans
    Sandrine Koechler
    UMR7156 Génétique Moléculaire, Génomique et Microbiologie, CNRS Universite de Strasbourg, 28 rue Goethe, 67000 Strasbourg, France
    BMC Microbiol 10:53. 2010
    ..Herminiimonas arsenicoxydans has been isolated from an arsenic- contaminated environment and has developed various mechanisms for coping with arsenic, including the oxidation of As(III) to As(V) as a detoxification mechanism...
  2. pmc Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans
    Jessica Cleiss-Arnold
    Département Microorganismes, UMR7156 Université de Strasbourg CNRS, Genetique Moleculaire, Génomique et Microbiologie, 28 rue Goethe, 67083 Strasbourg Cedex, France
    BMC Genomics 11:709. 2010
    ..In particular our previous studies have suggested the existence of a temporal induction of arsenite oxidase, a key enzyme in arsenic metabolism, in the presence of As(III)...
  3. pmc Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26
    Jérémy Andres
    Laboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156 CNRS Université de Strasbourg, Strasbourg, France
    Genome Biol Evol 5:934-53. 2013
    ..Taken together, these processes illustrate the impact environmental pressure can have on the evolution of bacterial genomes, improving the fitness of bacterial strains by the acquisition of novel functions...
  4. pmc Subinhibitory arsenite concentrations lead to population dispersal in Thiomonas sp
    Marie Marchal
    Genetique Moleculaire, Génomique et Microbiologie, UMR7156 CNRS and Université de Strasbourg, Strasbourg, France
    PLoS ONE 6:e23181. 2011
    ..Addressing this complex bacterial response to As(III) stress, which might be used by other microorganisms under various adverse conditions, may be essential to understand how Thiomonas strains persist in extreme environments...
  5. pmc Structure, function, and evolution of the Thiomonas spp. genome
    Florence Arsène-Ploetze
    Genetique Moleculaire, Génomique et Microbiologie, UMR7156 CNRS and Université de Strasbourg, Strasbourg, France
    PLoS Genet 6:e1000859. 2010
    ..Our results suggest that the Thiomonas genome has evolved through the gain or loss of genomic islands and that this evolution is influenced by the specific environmental conditions in which the strains live...
  6. pmc Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics
    Philippe N Bertin
    Genetique Moleculaire, Génomique et Microbiologie, UMR7156 CNRS and UdS, Strasbourg, France
    ISME J 5:1735-47. 2011
    ....
  7. pmc A tale of two oxidation states: bacterial colonization of arsenic-rich environments
    Daniel Muller
    Genetique Moleculaire, Génomique et Microbiologie, UMR7156 CNRS and Université Louis Pasteur, Strasbourg, France
    PLoS Genet 3:e53. 2007
    ..Such a microbial mechanism of detoxification, which is possibly exploitable for bioremediation applications of contaminated sites, may have played a crucial role in the occupation of ancient ecological niches on earth...
  8. pmc Carbon and arsenic metabolism in Thiomonas strains: differences revealed diverse adaptation processes
    Christopher G Bryan
    Genetique Moleculaire, Génomique et Microbiologie, UMR 7156 CNRS and Université de Strasbourg, Strasbourg, France
    BMC Microbiol 9:127. 2009
    ..Ynys1 and T. perometabolis are not. Moreover, T. arsenivorans and 3As present interesting physiological traits, in particular that these strains are able to use As(III) as an electron donor...
  9. doi request reprint Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data
    Stephanie Weiss
    Genetique Moleculaire, Génomique et Microbiologie, Universite Louis Pasteur, Strasbourg, France
    Biochimie 91:192-203. 2009
    ..This study provides therefore new insights into the adaptation processes of H. arsenicoxydans in response to arsenic...
  10. pmc In situ proteo-metabolomics reveals metabolite secretion by the acid mine drainage bio-indicator, Euglena mutabilis
    David Halter
    UMR7156 Université de Strasbourg CNRS, Genetique Moleculaire, Génomique et Microbiologie, Département Micro organismes, Génomes, Environnement, Strasbourg, France
    ISME J 6:1391-402. 2012
    ..mutabilis. Consequently, this protist may have an indirect but important role in AMD ecosystems but also in other ecological niches often described as nitrogen-limited...
  11. pmc Unsuspected diversity of arsenite-oxidizing bacteria as revealed by widespread distribution of the aoxB gene in prokaryotes
    Audrey Heinrich-Salmeron
    Laboratoire de Genetique Moleculaire, Genomique, Microbiologie, Département Microorganismes, Génomes, Environnement, UMR7156 Université de Strasbourg CNRS, 28 rue Goethe, 67083 Strasbourg Cedex, France
    Appl Environ Microbiol 77:4685-92. 2011
    ..An exhaustive analysis of AoxB sequences from this study and from public databases shows that horizontal gene transfer has likely played a role in the spreading of aoxB in prokaryotic communities...
  12. doi request reprint Taxonomic and functional prokaryote diversity in mildly arsenic-contaminated sediments
    David Halter
    Laboratoire de Genetique Moleculaire, Genomique, Microbiologie, Département Microorganismes, Génomes, Environnement, UMR7156 Université de Strasbourg CNRS, 28 rue Goethe, 67083 Strasbourg Cedex, France
    Res Microbiol 162:877-87. 2011
    ..Taken together, these results highlight the unsuspected high diversity of the arsenic-adapted prokaryotic community, with some phyla never having been described in highly arsenic-exposed sites...
  13. ncbi request reprint Herminiimonas arsenicoxydans sp. nov., a metalloresistant bacterium
    Daniel Muller
    Genetique Moleculaire, Genomique, Microbiologie, UMR 7156, CNRS and Université Louis Pasteur, 28 rue Goethe, 67000 Strasbourg, France
    Int J Syst Evol Microbiol 56:1765-9. 2006
    ..Thus, strain ULPAs1(T) (=CCM 7303(T)=DSM 17148(T)=LMG 22961(T)) is the type strain of a novel species of Herminiimonas, for which the name Herminiimonas arsenicoxydans sp. nov. is proposed...
  14. doi request reprint Surface properties and intracellular speciation revealed an original adaptive mechanism to arsenic in the acid mine drainage bio-indicator Euglena mutabilis
    David Halter
    Département Microorganismes, Génomes, Environnement UMR7156 Université de Strasbourg CNRS, Strasbourg, France
    Appl Microbiol Biotechnol 93:1735-44. 2012
    ..gracilis. Taken together, our results revealed the existence of a specific arsenical response of E. mutabilis that may play a role in its hypertolerance to this toxic metalloid...
  15. ncbi request reprint Identification of genes and proteins involved in the pleiotropic response to arsenic stress in Caenibacter arsenoxydans, a metalloresistant beta-proteobacterium with an unsequenced genome
    Christine Carapito
    LSMBO, Laboratoire de Spectrométrie de Masse Bio Organique ECPM, Bâtiment R5, 67087 Strasbourg, France CNRS UMR 7509 Université Louis Pasteur, Strasbourg, France
    Biochimie 88:595-606. 2006
    ....
  16. doi request reprint Arsenic in contaminated waters: biogeochemical cycle, microbial metabolism and biotreatment processes
    Didier Lièvremont
    Genetique Moleculaire, Génomique et Microbiologie, UMR7156 CNRS, Universite de Strasbourg, 28 rue Goethe, 67000 Strasbourg, France
    Biochimie 91:1229-37. 2009
    ..This review describes the development of bioprocesses for the treatment of arsenic-contaminated waters based on bacterial metabolism and biogeochemical cycling of arsenic...
  17. doi request reprint Advances in environmental genomics: towards an integrated view of micro-organisms and ecosystems
    Philippe N Bertin
    Genetique Moleculaire, Génomique et Microbiologie, Universite Louis Pasteur, UMR7156 CNRS, Strasbourg, France
    Microbiology 154:347-59. 2008
    ..Combined with classical methods of physico-chemistry and microbiology, these endeavours should provide us with an integrated view of how micro-organisms adapt to particular ecological niches and participate in the dynamics of ecosystems...
  18. doi request reprint Metagenomic insights into microbial metabolism affecting arsenic dispersion in Mediterranean marine sediments
    Frederic Plewniak
    Département Microorganismes, Génomes, Environnement, Genetique Moleculaire, Génomique et Microbiologie, UMR7156 Université de Strasbourg CNRS, 28 rue Goethe, 67083, Strasbourg Cedex, France
    Mol Ecol 22:4870-83. 2013
    ..This study also demonstrates that it is possible to draw sound conclusions from comparing complex and similar unassembled metagenomes at the functional level, even with very low sequence coverage. ..