Georgios Pavlopoulos

Summary

URL: http://sites.google.com/site/pavlopoulossite

Publications

  1. pmc Arena3D: visualization of biological networks in 3D
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg, Germany
    BMC Syst Biol 2:104. 2008
  2. pmc Medusa: A tool for exploring and clustering biological networks
    Georgios A Pavlopoulos
    Katholieke Universiteit Leuven, Faculty of Engineering ESAT SCD, Kasteelpark Arenberg 10, 3001 Leuven Heverlee, Belgium
    BMC Res Notes 4:384. 2011
  3. pmc Using graph theory to analyze biological networks
    Georgios A Pavlopoulos
    Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece
    BioData Min 4:10. 2011
  4. pmc GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques
    Venkata P Satagopam
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg D69117, Germany
    Database (Oxford) 2010:baq019. 2010
  5. pmc A reference guide for tree analysis and visualization
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg, Germany
    BioData Min 3:1. 2010
  6. pmc LAITOR--Literature Assistant for Identification of Terms co-Occurrences and Relationships
    Adriano Barbosa-Silva
    Max Delbruck Center for Molecular Medicine, Berlin, Germany
    BMC Bioinformatics 11:70. 2010
  7. pmc GIBA: a clustering tool for detecting protein complexes
    Charalampos N Moschopoulos
    Pattern Recognition Lab, Department of Computer Engineering and Informatics, University of Patras, Patra, Rio, GR 26500, Greece
    BMC Bioinformatics 10:S11. 2009
  8. pmc jClust: a clustering and visualization toolbox
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL Meyerhofstrasse 1, Heidelberg, Germany
    Bioinformatics 25:1994-6. 2009
  9. pmc OnTheFly: a tool for automated document-based text annotation, data linking and network generation
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL Meyerhofstrasse 1, Heidelberg
    Bioinformatics 25:977-8. 2009
  10. pmc A survey of visualization tools for biological network analysis
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg, Germany
    BioData Min 1:12. 2008

Collaborators

Detail Information

Publications13

  1. pmc Arena3D: visualization of biological networks in 3D
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg, Germany
    BMC Syst Biol 2:104. 2008
    ..Our goal is to enable many thousands of entities to be visualized meaningfully and with high performance...
  2. pmc Medusa: A tool for exploring and clustering biological networks
    Georgios A Pavlopoulos
    Katholieke Universiteit Leuven, Faculty of Engineering ESAT SCD, Kasteelpark Arenberg 10, 3001 Leuven Heverlee, Belgium
    BMC Res Notes 4:384. 2011
    ..abstract:..
  3. pmc Using graph theory to analyze biological networks
    Georgios A Pavlopoulos
    Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece
    BioData Min 4:10. 2011
    ..This network profiling combined with knowledge extraction will help us to better understand the biological significance of the system...
  4. pmc GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques
    Venkata P Satagopam
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg D69117, Germany
    Database (Oxford) 2010:baq019. 2010
    ..Database URLs: http://schneider.embl.de/human_gpdb; http://bioinformatics.biol.uoa.gr/human_gpdb/..
  5. pmc A reference guide for tree analysis and visualization
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg, Germany
    BioData Min 3:1. 2010
    ..Here we focus on freely available software that offers to the users various tree-representation methodologies for biological data analysis...
  6. pmc LAITOR--Literature Assistant for Identification of Terms co-Occurrences and Relationships
    Adriano Barbosa-Silva
    Max Delbruck Center for Molecular Medicine, Berlin, Germany
    BMC Bioinformatics 11:70. 2010
    ..Therefore, the study of the current literature about a selected topic deposited in public databases, facilitates the generation of novel hypotheses associating a set of bioentities to a common context...
  7. pmc GIBA: a clustering tool for detecting protein complexes
    Charalampos N Moschopoulos
    Pattern Recognition Lab, Department of Computer Engineering and Informatics, University of Patras, Patra, Rio, GR 26500, Greece
    BMC Bioinformatics 10:S11. 2009
    ....
  8. pmc jClust: a clustering and visualization toolbox
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL Meyerhofstrasse 1, Heidelberg, Germany
    Bioinformatics 25:1994-6. 2009
    ..The combination of a simple input file format, a set of clustering and filtering algorithms linked together with the visualization tool provides a powerful tool for data analysis and information extraction...
  9. pmc OnTheFly: a tool for automated document-based text annotation, data linking and network generation
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL Meyerhofstrasse 1, Heidelberg
    Bioinformatics 25:977-8. 2009
    ....
  10. pmc A survey of visualization tools for biological network analysis
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg, Germany
    BioData Min 1:12. 2008
    ..We comment on the functionality, the limitations and the specific strengths of these tools, and how these tools could be further developed in the direction of data integration and information sharing...
  11. pmc Human gene correlation analysis (HGCA): a tool for the identification of transcriptionally co-expressed genes
    Ioannis Michalopoulos
    Cryobiology of Stem Cells, Centre of Immunology and Transplantation, Biomedical Research Foundation, Academy of Athens, Soranou Athens, Greece
    BMC Res Notes 5:265. 2012
    ....
  12. pmc Which clustering algorithm is better for predicting protein complexes?
    Charalampos N Moschopoulos
    Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Soranou Efessiou 4, 11527 Athens, Greece
    BMC Res Notes 4:549. 2011
    ..abstract:..
  13. pmc Arena3D: visualizing time-driven phenotypic differences in biological systems
    Maria Secrier
    Structural and Computational Biology Unit, European Molecular Biology Laboratory EMBL, Meyerhofstrasse 1, Heidelberg 69117, Germany
    BMC Bioinformatics 13:45. 2012
    ..It uses a layered display to separate different levels of information while emphasizing the connections between them. We present novel developments of the tool for the visualization and analysis of dynamic genotype-phenotype landscapes...