Maté Ongenaert

Summary

Affiliation: Ghent University
Location: Ghent, Belgium

Publications

  1. pmc Discovery of DNA methylation markers in cervical cancer using relaxation ranking
    Maté Ongenaert
    Laboratory for Bioinformatics and Computational Genomics BioBix, Department of Molecular Biotechnology, Faculty of Bioscience Engineering, Ghent University, Belgium
    BMC Med Genomics 1:57. 2008
  2. pmc Proteins with an Euonymus lectin-like domain are ubiquitous in Embryophyta
    Elke Fouquaert
    Laboratory of Biochemistry and Glycobiology, Department of Molecular Biotechnology, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
    BMC Plant Biol 9:136. 2009
  3. pmc Phylogenetic and specificity studies of two-domain GNA-related lectins: generation of multispecificity through domain duplication and divergent evolution
    Els J M Van Damme
    Department of Molecular Biotechnology, Laboratory of Biochemistry and Glycobiology, Ghent University, Coupure Links 653, B 9000 Gent, Belgium
    Biochem J 404:51-61. 2007
  4. pmc PubMeth: a cancer methylation database combining text-mining and expert annotation
    Maté Ongenaert
    Department of Molecular Biotechnology, Faculty of Bioscience Engineering, Laboratory for Bioinformatics and Computational Genomics, Ghent University, B 9000 Ghent, Belgium
    Nucleic Acids Res 36:D842-6. 2008
  5. pmc Genome-wide promoter analysis uncovers portions of the cancer methylome
    Mohammad Obaidul Hoque
    Department of Otolaryngology Head and Neck Surgery, The Johns Hopkins School of Medicine, Baltimore, Maryland 21231, USA
    Cancer Res 68:2661-70. 2008
  6. ncbi Critical evaluation of the use of bioinformatics as a theoretical tool to find high-potential sources of ACE inhibitory peptides
    Lieselot Vercruysse
    Laboratory of Agrozoology, Department of Crop Protection, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B 9000 Ghent, Belgium
    Peptides 30:575-82. 2009
  7. doi The N-myc downstream regulated gene (NDRG) family: diverse functions, multiple applications
    Veerle Melotte
    Department of Pathology, School for Oncology and Developmental Biology, Maastricht University Medical Center, Maastricht, The Netherlands
    FASEB J 24:4153-66. 2010
  8. doi Epigenetic databases and computational methodologies in the analysis of epigenetic datasets
    Maté Ongenaert
    OncoMethylome Sciences, Liege, Belgium
    Adv Genet 71:259-95. 2010
  9. doi Jasmonate response of the Nicotiana tabacum agglutinin promoter in Arabidopsis thaliana
    Annelies Delporte
    Ghent University, Department of Molecular Biotechnology, Lab of Biochemistry and Glycobiology, Coupure Links 653, 9000 Ghent, Belgium
    Plant Physiol Biochem 49:843-51. 2011

Collaborators

Detail Information

Publications9

  1. pmc Discovery of DNA methylation markers in cervical cancer using relaxation ranking
    Maté Ongenaert
    Laboratory for Bioinformatics and Computational Genomics BioBix, Department of Molecular Biotechnology, Faculty of Bioscience Engineering, Ghent University, Belgium
    BMC Med Genomics 1:57. 2008
    ..A strategy to combine and rank data from these different data sources is essential to minimize the experimental work in the validation steps...
  2. pmc Proteins with an Euonymus lectin-like domain are ubiquitous in Embryophyta
    Elke Fouquaert
    Laboratory of Biochemistry and Glycobiology, Department of Molecular Biotechnology, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
    BMC Plant Biol 9:136. 2009
    ..The distribution and the diversity of proteins with an Euonymus lectin (EUL) domain were investigated using detailed analysis of sequences in publicly accessible genome and transcriptome databases...
  3. pmc Phylogenetic and specificity studies of two-domain GNA-related lectins: generation of multispecificity through domain duplication and divergent evolution
    Els J M Van Damme
    Department of Molecular Biotechnology, Laboratory of Biochemistry and Glycobiology, Ghent University, Coupure Links 653, B 9000 Gent, Belgium
    Biochem J 404:51-61. 2007
    ....
  4. pmc PubMeth: a cancer methylation database combining text-mining and expert annotation
    Maté Ongenaert
    Department of Molecular Biotechnology, Faculty of Bioscience Engineering, Laboratory for Bioinformatics and Computational Genomics, Ghent University, B 9000 Ghent, Belgium
    Nucleic Acids Res 36:D842-6. 2008
    ..The summarized overview of the results is very useful in case more genes or cancer types are searched at the same time...
  5. pmc Genome-wide promoter analysis uncovers portions of the cancer methylome
    Mohammad Obaidul Hoque
    Department of Otolaryngology Head and Neck Surgery, The Johns Hopkins School of Medicine, Baltimore, Maryland 21231, USA
    Cancer Res 68:2661-70. 2008
    ..Identification of a large number of genes with cancer-specific methylation provides new targets for diagnostic and therapeutic intervention, and opens fertile avenues for basic research in tumor biology...
  6. ncbi Critical evaluation of the use of bioinformatics as a theoretical tool to find high-potential sources of ACE inhibitory peptides
    Lieselot Vercruysse
    Laboratory of Agrozoology, Department of Crop Protection, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B 9000 Ghent, Belgium
    Peptides 30:575-82. 2009
    ..In conclusion, in food science, in silico analysis can be used as fast initial screening tool to look for high-potential sources of ACE inhibitory peptides and other peptidic bioactivities...
  7. doi The N-myc downstream regulated gene (NDRG) family: diverse functions, multiple applications
    Veerle Melotte
    Department of Pathology, School for Oncology and Developmental Biology, Maastricht University Medical Center, Maastricht, The Netherlands
    FASEB J 24:4153-66. 2010
    ..Finally, their role in disease and potential clinical applications (their role as detection or prognostic markers) are discussed...
  8. doi Epigenetic databases and computational methodologies in the analysis of epigenetic datasets
    Maté Ongenaert
    OncoMethylome Sciences, Liege, Belgium
    Adv Genet 71:259-95. 2010
    ..This demonstrates how a DNA-methylation dataset might look like and the different steps in a possible analysis strategy and how to interpret the results...
  9. doi Jasmonate response of the Nicotiana tabacum agglutinin promoter in Arabidopsis thaliana
    Annelies Delporte
    Ghent University, Department of Molecular Biotechnology, Lab of Biochemistry and Glycobiology, Coupure Links 653, 9000 Ghent, Belgium
    Plant Physiol Biochem 49:843-51. 2011
    ..These new jasmonate-responsive tobacco promoter sequences can be used as new tools in the study of jasmonate signalling related to plant development and defense...