Karoline Faust

Summary

Country: Belgium

Publications

  1. doi Metabolic pathfinding using RPAIR annotation
    Karoline Faust
    Laboratoire de Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B 1050 Bruxelles, Belgium
    J Mol Biol 388:390-414. 2009
  2. pmc Pathway discovery in metabolic networks by subgraph extraction
    Karoline Faust
    Laboratoire de Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles, Bruxelles, Belgium
    Bioinformatics 26:1211-8. 2010
  3. doi Predicting metabolic pathways by sub-network extraction
    Karoline Faust
    Department of Applied Biological Sciences DBIT, Vrije Universiteit Brussel, Bruxelles, Belgium
    Methods Mol Biol 804:107-30. 2012
  4. doi Network Analysis Tools: from biological networks to clusters and pathways
    Sylvain Brohée
    Laboratoire de Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles, Campus Plaine, CP 263, Boulevard du Triomphe, Bruxelles, Belgium
    Nat Protoc 3:1616-29. 2008
  5. pmc NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
    Sylvain Brohée
    Laboratoire de Bioinformatique des Génomes et Réseaux BiGRE, Universite Libre de Bruxelles ULB, Boulevard du Triomphe, CP263, B 1050 Bruxelles, Belgium
    Nucleic Acids Res 36:W444-51. 2008

Detail Information

Publications5

  1. doi Metabolic pathfinding using RPAIR annotation
    Karoline Faust
    Laboratoire de Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B 1050 Bruxelles, Belgium
    J Mol Biol 388:390-414. 2009
    ..Our pathfinding approach is available as part of the Network Analysis Tools...
  2. pmc Pathway discovery in metabolic networks by subgraph extraction
    Karoline Faust
    Laboratoire de Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles, Bruxelles, Belgium
    Bioinformatics 26:1211-8. 2010
    ..Although these approaches have been adapted to metabolic networks, they are generic enough to be adjusted to other biological networks as well...
  3. doi Predicting metabolic pathways by sub-network extraction
    Karoline Faust
    Department of Applied Biological Sciences DBIT, Vrije Universiteit Brussel, Bruxelles, Belgium
    Methods Mol Biol 804:107-30. 2012
    ....
  4. doi Network Analysis Tools: from biological networks to clusters and pathways
    Sylvain Brohée
    Laboratoire de Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles, Campus Plaine, CP 263, Boulevard du Triomphe, Bruxelles, Belgium
    Nat Protoc 3:1616-29. 2008
    ..e., clusters or paths) or tables displaying statistics. Typical networks comprising several thousands of nodes and arcs can be analyzed within a few minutes. The complete protocol can be read and executed in approximately 1 h...
  5. pmc NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
    Sylvain Brohée
    Laboratoire de Bioinformatique des Génomes et Réseaux BiGRE, Universite Libre de Bruxelles ULB, Boulevard du Triomphe, CP263, B 1050 Bruxelles, Belgium
    Nucleic Acids Res 36:W444-51. 2008
    ..NeAT can also be used as web services (SOAP/WSDL interface), in order to design programmatic workflows and integrate them with other available resources...