Research Topics

Arndt von Haeseler

Summary

Affiliation: University of Vienna
Country: Austria

Publications

  1. pmc State-of the art methodologies dictate new standards for phylogenetic analysis
    Maria Anisimova
    Department of Computer Science, Swiss Federal Institute of Technology ETH, Zurich 8092, Switzerland
    BMC Evol Biol 13:161. 2013
  2. pmc TreeSnatcher plus: capturing phylogenetic trees from images
    Thomas Laubach
    Department of Bioinformatics, Heinrich Heine University Duesseldorf, Universitaetsstrasse 1, Duesseldorf 40225, Germany
    BMC Bioinformatics 13:110. 2012
  3. pmc On the group theoretical background of assigning stepwise mutations onto phylogenies
    Mareike Fischer
    Department of Statistics and School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand
    Algorithms Mol Biol 7:36. 2012
  4. pmc Do we still need supertrees?
    Arndt von Haeseler
    Center for Integrative Bioinformatics Vienna, Max F Perutz Laboratories, University of Vienna and Medical University Vienna, Dr, Bohr Gasse 9, 1030 Vienna, Austria
    BMC Biol 10:13. 2012
  5. pmc Gene expression profiling for molecular distinction and characterization of laser captured primary lung cancers
    Astrid Rohrbeck
    Department of Hematology, Oncology and Clinical Immunology, Heinrich Heine University Duesseldorf, Duesseldorf, Germany
    J Transl Med 6:69. 2008
  6. pmc Loss of matK RNA editing in seed plant chloroplasts
    Michael Tillich
    Institut fur Biologie, Humboldt Universitat zu Berlin, Molekulare Genetik, Berlin D 10115, Germany
    BMC Evol Biol 9:201. 2009
  7. pmc Rooted triple consensus and anomalous gene trees
    Gregory B Ewing
    Center for Integrative Bioinformatics Vienna, Max F, Perutz Laboratories, Dr, Bohr Gasse 9, A 1030 Vienna, Austria
    BMC Evol Biol 8:118. 2008
  8. pmc HaMStR: profile hidden markov model based search for orthologs in ESTs
    Ingo Ebersberger
    Center for Integrative Bioinformatics Vienna, Max F, Perutz Laboratories, Vienna, Austria
    BMC Evol Biol 9:157. 2009
  9. pmc TonB-dependent transporters and their occurrence in cyanobacteria
    Oliver Mirus
    JWGU Frankfurt am Main, Cluster of Excellence Macromolecular Complexes, Centre of Membrane Proteomics, Department of Biosciences, Max von Laue Str 9, 60438 Frankfurt, Germany
    BMC Biol 7:68. 2009
  10. pmc FACT: functional annotation transfer between proteins with similar feature architectures
    Tina Koestler
    Center for Integrative Bioinformatics Vienna, Max F Perutz Laboratories, Dr Bohrgasse 9, A 1030 Vienna, Austria
    BMC Bioinformatics 11:417. 2010

Collaborators

  • Ingo Ebersberger
  • Maria Anisimova
  • Mareike Fischer
  • Thomas Laubach
  • Anne Kupczok
  • Tina Koestler
  • Oliver Mirus
  • Sascha Strauss
  • Michael Tillich
  • Heiko A Schmidt
  • Gregory B Ewing
  • Astrid Rohrbeck
  • Tal Pupko
  • HervĂ© Philippe
  • Jim Provan
  • David A Liberles
  • Minh Anh Thi Nguyen
  • Steffen Klaere
  • Martin J Lercher
  • Arndt Von Haeseler
  • Christian Schmitz-Linneweber
  • Enrico Schleiff
  • Kerstin Nicolaisen
  • Katrin Schulerowitz
  • Vinh Le Sy
  • Uwe G Maier
  • Rainer Haas
  • Ralf Kronenwett
  • Helmut E Gabbert
  • Andreas Schwalen
  • Ulrich Peter Rohr
  • Gerald Pitschke
  • Guillermo G Pardillos
  • Helene Geddert
  • Matthias Schott
  • Michael Rosskopf
  • Judith Neukirchen

Detail Information

Publications11

  1. pmc State-of the art methodologies dictate new standards for phylogenetic analysis
    Maria Anisimova
    Department of Computer Science, Swiss Federal Institute of Technology ETH, Zurich 8092, Switzerland
    BMC Evol Biol 13:161. 2013
    ..The rapid pace at which sequence data accumulate quickly outdates such publications. Although clearly, discoveries stemming from data mining, reports of new tools and databases and review papers are also desirable. ..
  2. pmc TreeSnatcher plus: capturing phylogenetic trees from images
    Thomas Laubach
    Department of Bioinformatics, Heinrich Heine University Duesseldorf, Universitaetsstrasse 1, Duesseldorf 40225, Germany
    BMC Bioinformatics 13:110. 2012
    ..However, one cannot easily extract a machine-readable representation from such images. Therefore, new software emerges that helps to preserve phylogenies digitally for future research...
  3. pmc On the group theoretical background of assigning stepwise mutations onto phylogenies
    Mareike Fischer
    Department of Statistics and School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand
    Algorithms Mol Biol 7:36. 2012
    ..We illustrate this approach by looking at Abelian groups over twenty states and critically discuss their biological usefulness when investigating amino acids...
  4. pmc Do we still need supertrees?
    Arndt von Haeseler
    Center for Integrative Bioinformatics Vienna, Max F Perutz Laboratories, University of Vienna and Medical University Vienna, Dr, Bohr Gasse 9, 1030 Vienna, Austria
    BMC Biol 10:13. 2012
    ..I discuss the principles of supertree methods and the competitor supermatrix approaches. I argue that both methods are important to infer phylogenetic relationships.See research article http://www.biomedcentral.com/1741-7007/10/12...
  5. pmc Gene expression profiling for molecular distinction and characterization of laser captured primary lung cancers
    Astrid Rohrbeck
    Department of Hematology, Oncology and Clinical Immunology, Heinrich Heine University Duesseldorf, Duesseldorf, Germany
    J Transl Med 6:69. 2008
    ....
  6. pmc Loss of matK RNA editing in seed plant chloroplasts
    Michael Tillich
    Institut fur Biologie, Humboldt Universitat zu Berlin, Molekulare Genetik, Berlin D 10115, Germany
    BMC Evol Biol 9:201. 2009
    ..However, large-scale analyses of the evolution of individual editing sites have not yet been undertaken...
  7. pmc Rooted triple consensus and anomalous gene trees
    Gregory B Ewing
    Center for Integrative Bioinformatics Vienna, Max F, Perutz Laboratories, Dr, Bohr Gasse 9, A 1030 Vienna, Austria
    BMC Evol Biol 8:118. 2008
    ..In this paper we propose a rooted triple approach to finding the correct species tree in the presence of AGTs...
  8. pmc HaMStR: profile hidden markov model based search for orthologs in ESTs
    Ingo Ebersberger
    Center for Integrative Bioinformatics Vienna, Max F, Perutz Laboratories, Vienna, Austria
    BMC Evol Biol 9:157. 2009
    ..Existing methods either depend on a known species tree or cannot cope with redundancy in EST data...
  9. pmc TonB-dependent transporters and their occurrence in cyanobacteria
    Oliver Mirus
    JWGU Frankfurt am Main, Cluster of Excellence Macromolecular Complexes, Centre of Membrane Proteomics, Department of Biosciences, Max von Laue Str 9, 60438 Frankfurt, Germany
    BMC Biol 7:68. 2009
    ..However, for cyanobacteria almost nothing is known about possible TonB-dependent uptake systems for iron or other substrates...
  10. pmc FACT: functional annotation transfer between proteins with similar feature architectures
    Tina Koestler
    Center for Integrative Bioinformatics Vienna, Max F Perutz Laboratories, Dr Bohrgasse 9, A 1030 Vienna, Austria
    BMC Bioinformatics 11:417. 2010
    ..Finally, due to convergent evolution, functional equivalence is not necessarily linked to common ancestry. Therefore complementary approaches are required to identify functional equivalents...
  11. pmc Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
    Anne Kupczok
    Center for Integrative Bioinformatics Vienna, Max F, Perutz Laboratories, University of Vienna, Medical University of Vienna, University of Veterinary Medicine Vienna, Dr, Bohr Gasse 9, A 1030 Vienna, Austria
    Algorithms Mol Biol 5:37. 2010
    ..abstract:..