Research Topics
Genomes and Genes | Diethard MattanovichSummaryAffiliation: University of Natural Resources and Applied Life Sciences Country: Austria Publications
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Publications
Repressible promoters - a novel tool to generate conditional mutants in Pichia pastorisMarizela Delic
Department of Biotechnology, University of Natural Resources and Life Sciences Vienna BOKU, Muthgasse 18, 1190, Vienna, Austria
Microb Cell Fact 12:6. 2013..They are also popular in biotechnological processes, like heterologous protein production...
Protein trafficking, ergosterol biosynthesis and membrane physics impact recombinant protein secretion in Pichia pastorisKristin Baumann
Department of Chemical Engineering, Universitat Autonoma de Barcelona, Bellaterra Cerdanyola del Valles, Spain
Microb Cell Fact 10:93. 2011..Transcriptional analysis and data mining allowed for the selection of potential targets for strain improvement. A first selection of these candidates has been evaluated as recombinant protein secretion enhancers...
Lactate production yield from engineered yeasts is dependent from the host background, the lactate dehydrogenase source and the lactate exportPaola Branduardi
Universita degli Studi di Milano Bicocca, Dipartimento di Biotecnologie e Bioscienze, P, zza della Scienza 2, 20126 Milano, Italy
Microb Cell Fact 5:4. 2006....
Macromolecular and elemental composition analysis and extracellular metabolite balances of Pichia pastoris growing at different oxygen levelsMarc Carnicer
Departament d Enginyeria Quimica, Escola d Enginyeria, Universitat Autonoma de Barcelona, Bellaterra, Spain
Microb Cell Fact 8:65. 2009..g. recombinant protein production vs. non production conditions) are compared...
A multi-level study of recombinant Pichia pastoris in different oxygen conditionsKristin Baumann
Department of Chemical Engineering, Autonomous University of Barcelona, Spain
BMC Syst Biol 4:141. 2010..Gene expression profiling was combined with proteomic analyses and the 13C isotope labelling based experimental determination of metabolic fluxes in the central carbon metabolism...
The impact of oxygen on the transcriptome of recombinant S. cerevisiae and P. pastoris - a comparative analysisKristin Baumann
Department of Chemical Engineering, Autonomous University of Barcelona, Spain
BMC Genomics 12:218. 2011....
Overexpression of the riboflavin biosynthetic pathway in Pichia pastorisHans Marx
Institute of Applied Microbiology, Department of Biotechnology, BOKU University of Natural Resources and Applied Life Sciences, Muthgasse 18, 1190, Wien, Austria
Microb Cell Fact 7:23. 2008..abstract:..
Protein folding and conformational stress in microbial cells producing recombinant proteins: a host comparative overviewBrigitte Gasser
University of Natural Resources and Applied Life Sciences Vienna, Department of Biotechnology, Vienna, Austria
Microb Cell Fact 7:11. 2008....
Open access to sequence: browsing the Pichia pastoris genomeDiethard Mattanovich
Department of Biotechnology, University of Natural Resources and Applied Life Sciences, Vienna, Austria
Microb Cell Fact 8:53. 2009..pastoris research, so that the Pichia community can benefit from exchange of knowledge, data and materials...
Genome, secretome and glucose transport highlight unique features of the protein production host Pichia pastorisDiethard Mattanovich
Department of Biotechnology, University of Natural Resources and Applied Life Sciences, Vienna, Austria
Microb Cell Fact 8:29. 2009..abstract:..
The response to unfolded protein is involved in osmotolerance of Pichia pastorisMartin Dragosits
Department of Biotechnology, BOKU University of Natural Resources and Applied Life Sciences, Vienna, Austria
BMC Genomics 11:207. 2010..While our main intention was to analyze the effect of different osmolarities on P. pastoris in general, this was complemented by studying it in context with recombinant protein production...
The effect of temperature on the proteome of recombinant Pichia pastorisMartin Dragosits
Department of Biotechnology, BOKU University of Natural Resources and Applied Life Sciences, Vienna, Austria
J Proteome Res 8:1380-92. 2009..These data indicate that folding stress is generally decreased at lower cultivation temperatures, enabling more efficient heterologous protein secretion in P. pastoris host cells...
Transcriptomics-based identification of novel factors enhancing heterologous protein secretion in yeastsBrigitte Gasser
Institute of Applied Microbiology, Department of Biotechnology, University of Natural Resources and Applied Life Sciences Vienna, Muthgasse 18, A 1190 Vienna, Austria
Appl Environ Microbiol 73:6499-507. 2007..5-fold in fed-batch fermentations of P. pastoris...
Novel insights into the unfolded protein response using Pichia pastoris specific DNA microarraysAlexandra Graf
Institute of Applied Microbiology, Department of Biotechnology, University of Natural Resources and Applied Life Sciences Vienna, Muthgasse 18, 1190 Vienna, Austria
BMC Genomics 9:390. 2008..pastoris and analyzed the unfolded protein response (UPR) in this yeast species, as compared to S. cerevisiae...
Monitoring of transcriptional regulation in Pichia pastoris under protein production conditionsBrigitte Gasser
University of Natural Resources and Applied Life Sciences Vienna, Department of Biotechnology, Institute of Applied Microbiology, Vienna, Austria
BMC Genomics 8:179. 2007....
Recombinant protein production in yeastsDiethard Mattanovich
Department of Biotechnology, University of Natural Resources and Life Sciences, and Austrian Centre of Industrial Biotechnology, Vienna, Austria
Methods Mol Biol 824:329-58. 2012....
Identification and characterisation of novel Pichia pastoris promoters for heterologous protein productionGerhard Stadlmayr
Department of Biotechnology, BOKU University of Natural Resources and Life Sciences, Muthgasse 18, 1190 Vienna, Austria
J Biotechnol 150:519-29. 2010....
Induction and measurement of UPR and osmotic stress in the yeast Pichia pastorisMartin Dragosits
Department of Biotechnology, University of Natural Resources and Life Sciences, Vienna, Austria
Methods Enzymol 489:165-88. 2011..pastoris directly without the hassle to modify standard protocols designed for the model organism S. cerevisiae first...
Oxidative protein folding and unfolded protein response elicit differing redox regulation in endoplasmic reticulum and cytosol of yeastMarizela Delic
Department of Biotechnology, University of Natural Resources and Life Sciences Vienna, 1190 Vienna, Austria
Free Radic Biol Med 52:2000-12. 2012..These data clearly demonstrate that protein folding and ER stress have a severe impact on the cytosolic redox balance, which may be a major factor during development of folding-related diseases...
Engineering of Pichia pastoris for improved production of antibody fragmentsBrigitte Gasser
Institute of Applied Microbiology, BOKU University of Natural Resources and Applied Life Sciences Vienna, Muthgasse 18, A-1190 Vienna, Austria
Biotechnol Bioeng 94:353-61. 2006..3-fold, PDI enabled an increase of the Fab level by 1.9-fold. Hence, the formation of interchain disulfide bonds can be seen as a major rate limiting factor to Fab assembly and subsequent secretion...
Genome-scale analysis of library sorting (GALibSo): Isolation of secretion enhancing factors for recombinant protein production in Pichia pastorisGerhard Stadlmayr
Department of Biotechnology, BOKU University of Natural Resources and Applied Life Sciences, Vienna, Austria
Biotechnol Bioeng 105:543-55. 2010..The microarray based monitoring of the enrichment of genes causing enhanced protein secretory capacity led to novel insights into the limitation of protein secretion...
Cloning, disruption and protein secretory phenotype of the GAS1 homologue of Pichia pastorisHans Marx
Institute of Applied Microbiology, Department of Biotechnology, University of Natural Resources and Applied Life Sciences, Vienna, Austria
FEMS Microbiol Lett 264:40-7. 2006..pastoris, human trypsinogen, human serum albumin and Rhizopus oryzae lipase, was evaluated. While the disruption had no effect on the secretion of trypsinogen and albumin, the amount of lipase released from the cells was doubled...
Intracellular interactome of secreted antibody Fab fragment in Pichia pastoris reveals its routes of secretion and degradationMartin Pfeffer
Department of Biotechnology, University of Natural Resources and Life Sciences BOKU, Vienna, Austria
Appl Microbiol Biotechnol 93:2503-12. 2012..This work will further facilitate our understanding how recombinant proteins behave in the secretory pathway...
High level expression of a promising anti-idiotypic antibody fragment vaccine against HIV-1 in Pichia pastorisJohannes S Gach
Institute of Applied Microbiology, University of Natural Resources and Applied Life Sciences, Muthgasse 18, A 1190 Vienna, Austria
J Biotechnol 128:735-46. 2007..Biochemical analysis confirmed that the N-glycosylation does not contribute to the binding properties of 3H6...
Directed gene copy number amplification in Pichia pastoris by vector integration into the ribosomal DNA locusHans Marx
Department of Biotechnology, BOKU, University of Natural Resources and Applied Life Sciences, Vienna, Austria
FEMS Yeast Res 9:1260-70. 2009....
Influence of growth temperature on the production of antibody Fab fragments in different microbes: a host comparative analysisMartin Dragosits
Dept of Biotechnology, University of Natural Resources and Life Sciences, Vienna, Austria
Biotechnol Prog 27:38-46. 2011....
16 years research on lactic acid production with yeast - ready for the market?Michael Sauer
School of Bioengineering, University of Applied Sciences FH Campus Wien, Vienna, Austria
Biotechnol Genet Eng Rev 27:229-56. 2010..Now yeasts are very close to industrial exploitation - here we summarize the developments in this field...
Improvement of lactic acid production in Saccharomyces cerevisiae by cell sorting for high intracellular pHMinoska Valli
Institute of Applied Microbiology, University of Natural Resources and Applied Life Sciences, Muthgasse 18, A-1190 Vienna, Austria
Appl Environ Microbiol 72:5492-9. 2006..The best lactic-acid-producing strain was identified within the screening of CEN.PK m850 mutants...
Engineering of biotin-prototrophy in Pichia pastoris for robust production processesBrigitte Gasser
Department of Biotechnology, University of Natural Resources and Life Sciences BOKU, Muthgasse 18, 1190 Vienna, Austria
Metab Eng 12:573-80. 2010..Another field of application for these truly prototrophic hosts is the production of biochemicals and small metabolites, where defined mineral media leads to easier purification procedures...
U13C cell extract of Pichia pastoris--a powerful tool for evaluation of sample preparation in metabolomicsStefan Neubauer
Department of Chemistry, Division of Analytical Chemistry, University of Natural Resources and Life Sciences BOKU, Vienna, Austria
J Sep Sci 35:3091-105. 2012..The optimum case would be represented by metabolites, easy to extract from yeast with high and precise recovery. In other cases the total combined uncertainty was significantly higher...
Effect of increased expression of protein disulfide isomerase and heavy chain binding protein on antibody secretion in a recombinant CHO cell lineNicole Borth
Institute for Applied Microbiology, University of Natural Resources and Applied Life Sciences, Muthgasse 18, 1190 Vienna, Austria
Biotechnol Prog 21:106-11. 2005..Overexpression of BIP, both alone and in combination with PDI, reduced the specific secretion rate, whereas PDI, when overexpressed alone, caused an increase of product secretion rate...
Yeast systems biotechnology for the production of heterologous proteinsAlexandra Graf
Department of Biotechnology, Institute of Applied Microbiology, University of Natural Resources and Applied Life Sciences, Vienna, Austria
FEMS Yeast Res 9:335-48. 2009..The development of next generation sequencing technology enables an unexpected revival of genomic approaches, providing new potential for evolutionary engineering and inverse metabolic engineering...
Pichia pastoris: protein production host and model organism for biomedical researchBrigitte Gasser
University of Natural Resources and Life Sciences BOKU, Department of Biotechnology, 1190 Vienna, Austria
Future Microbiol 8:191-208. 2013..At the same time, it has become obvious that P. pastoris, as an evolutionarily more 'ancient' yeast, may in some cases be a better model for human cell biology and disease than Saccharomyces cerevisiae...
Accurate quantification of the redox-sensitive GSH/GSSG ratios in the yeast Pichia pastoris by HILIC-MS/MSChristina Haberhauer-Troyer
Department of Chemistry, Division of Analytical Chemistry, University of Natural Resources and Life Sciences, Muthgasse 18, 1190 Vienna, Austria
Anal Bioanal Chem 405:2031-9. 2013....
Bacterial expression and refolding of human trypsinogenHubertus Hohenblum
Institute of Applied Microbiology, University of Natural Resources and Applied Life Sciences, Vienna, Austria
J Biotechnol 109:3-11. 2004..The refolded trypsinogen was converted to trypsin by autocatalytic activation, and the utility for the detachment of mammalian cells in culture was proven...
Microbial production of 1,3-propanediolMichael Sauer
School of Bioengineering, FH Campus Wien University of Applied Sciences, Muthgasse 18, 1190 Vienna, Austria
Recent Pat Biotechnol 2:191-7. 2008..Similar questions arise for a variety of products if they are to be produced bio-based in large scale. However, special emphasis is given to 1,3-propanediol production...
Intracellular pH distribution in Saccharomyces cerevisiae cell populations, analyzed by flow cytometryMinoska Valli
Institute of Applied Microbiology, University of Natural Resources and Applied Life Sciences, Muthgasse 18, A-1190 Vienna, Austria
Appl Environ Microbiol 71:1515-21. 2005..Notably, a different behavior was observed for exponentially grown and stationary cells in terms of the appearance and development of these subpopulations as a response to a changing external pH...
Modeling and measuring intracellular fluxes of secreted recombinant protein in Pichia pastoris with a novel 34S labeling procedureMartin Pfeffer
University of Natural Resources and Life Sciences, Department of Biotechnology, Muthgasse 18, Vienna, Austria
Microb Cell Fact 10:47. 2011..Thus labeling procedures must be compatible with minimal production media and the usage of bioreactors. The inorganic and non-radioactive 34S labeled sodium sulfate meets both demands...
Antibody production with yeasts and filamentous fungi: on the road to large scale?Brigitte Gasser
Institute of Applied Microbiology, Department of Biotechnology, University of Natural Resources and Applied Life Sciences, Vienna, Austria
Biotechnol Lett 29:201-12. 2007..Following aspects are addressed: folding, assembly and secretion of antibody related proteins, process optimization to improve productivity and quality, proteolysis, and, as a major point of interest, glycosylation...
Microbial production of organic acids: expanding the marketsMichael Sauer
School of Bioengineering, FH Campus Wien University of Applied Sciences, Muthgasse 18, 1190 Wien, Austria
Trends Biotechnol 26:100-8. 2008..In this article, through analysis of the current advances in production of these acids, we present guidelines for future developments in this fast-moving field...
Stress in recombinant protein producing yeastsDiethard Mattanovich
Institute of Applied Microbiology, BOKU University of Natural Resources and Applied Life Sciences, Muthgasse 18, A 1190 Vienna, Austria
J Biotechnol 113:121-35. 2004..Apart from discussing well-documented stress reactions of yeasts in the context of heterologous protein production, some more speculative topics like quorum sensing and apoptosis are addressed...
From rumen to industryMichael Sauer
Department of Biotechnology, BOKU VIBT University of Natural Resources and Life Sciences, Muthgasse 18, Vienna 1190, Austria
Microb Cell Fact 11:121. 2012..We suggest to intensify the studies of the ruminal microbial ecosystem from an industrial microbiologists point of view in order to make use of this rich source of organisms and enzymes...
Induction without methanol: novel regulated promoters enable high-level expression in Pichia pastorisRoland Prielhofer
University of Natural Resources and Life Sciences, Department of Biotechnology, Muthgasse 18, Vienna, 1190, Austria
Microb Cell Fact 12:5. 2013..g. glycerol, while heterologous gene expression should be active in the feed phase under carbon (e.g. glucose) limitation...
Identification and deletion of the major secreted protein of Pichia pastorisSilvia Heiss
Department of Biotechnology, University of Natural Resources and Life Sciences BOKU, 1190, Vienna, Austria
Appl Microbiol Biotechnol 97:1241-9. 2013..Batch purification of a Fab fragment produced in the Δepx1 strain highlighted its superior purity due to the decreased host cell protein load...
Recombinant protein production 6 (Vienna, February 2011)Brigitte Gasser
Department of Biotechnology, University of Natural Resources and Life Sciences, Vienna, Austria
N Biotechnol 30:247-9. 2013..Additionally, the development of novel secretion systems was presented, giving one example of how to combine industry's needs with highly ambitious fundamental research...
Monitoring intracellular redox conditions in the endoplasmic reticulum of living yeastsMarizela Delic
Department of Biotechnology, University of Natural Resources and Applied Life Sciences BOKU, Vienna, Austria
FEMS Microbiol Lett 306:61-6. 2010..Contrary to previous results with roGFP, the optimized roGFP1_iE and roGFP1_iL constructs were not completely oxidized, and are therefore useful sensors for monitoring the ER under conditions when it is even more oxidized...
Six novel constitutive promoters for metabolic engineering of Aspergillus nigerMarzena Blumhoff
School of Bioengineering, University of Applied Sciences FH Campus Wien, Muthgasse 56, 1190, Vienna, Austria
Appl Microbiol Biotechnol 97:259-67. 2013..Product titers from the detection limit to up to 570 mg/L proved that the set of constitutive promoters is a powerful tool for the fine-tuning of metabolic pathways for the improvement of industrial production processes...
Mass spectrometry based analysis of nucleotides, nucleosides, and nucleobases--application to feed supplementsStefan Neubauer
Department of Chemistry, Division of Analytical Chemistry, University of Natural Resources and Life Sciences BOKU, Vienna, Austria
Anal Bioanal Chem 404:799-808. 2012..Sensitivity of LC-ICP-MS was 1-2 orders of magnitude lower than that of LC-MS-MS. Quantitative analysis of yeast products using complementary MS detection furnished values in good agreement...
1,3-Propanediol production from glycerol with Lactobacillus diolivoransStefan Pflügl
School of Bioengineering, FH Campus Wien University of Applied Sciences, Muthgasse 62, 1190 Vienna, Austria
Bioresour Technol 119:133-40. 2012..Furthermore, the addition of Vitamin B(12) to the culture medium increased production by 15% to a final titer of 84.5 g/l 1,3-propanediol...
Effects of gene dosage, promoters, and substrates on unfolded protein stress of recombinant Pichia pastorisHubertus Hohenblum
Institute of Applied Microbiology, BOKU-University of Natural Resources and Applied Life Sciences, Muthgasse 18, A-1190, Vienna, Austria
Biotechnol Bioeng 85:367-75. 2004....
Genome sequence of the ruminal bacterium Megasphaera elsdeniiHans Marx
Department of Biotechnology, BOKU University of Natural Resources and Life Sciences, Muthgasse 18, 1190 Vienna, Austria
J Bacteriol 193:5578-9. 2011..Furthermore, it is of biotechnological interest due to its capability of producing various volatile fatty acids. Here we report the complete genome sequence of M. elsdenii DSM 20460, the type strain for the species...
Assessing viability and cell-associated product of recombinant protein producing Pichia pastoris with flow cytometryHubertus Hohenblum
Institute of Applied Microbiology, BOKU--University of Natural Resources and Applied Life Sciences, Muthgasse 18, A-1190 Vienna, Austria
J Biotechnol 102:281-90. 2003..pastoris...
Optimization of recombinant protein expression level in Escherichia coli by flow cytometry and cell sortingElena Soriano
Institute of Applied Microbiology, University of Agricultural Sciences, Muthgasse 18, A-1190 Vienna, Austria
Biotechnol Bioeng 80:93-9. 2002..The clones obtained had a similar SOD production compared to the original strain, but were able to reach higher densities in a batch culture, which resulted in a higher total yield...
