Research Topics
Genomes and Genes
| Gert LubecSummaryAffiliation: University of Vienna Country: Austria Publications
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Detail Information
Publications
Proteomic characterization of the human cortical neuronal cell line HCN-2Andreas Peyrl
Department of Pediatrics, University of Vienna, Waehringer Guertel 18-20, A 1090 Vienna, Austria
J Chem Neuroanat 26:171-8. 2003..We could prove the existence of these 14 proteins in the human neuron, extending the list of proteins with neuronal expression and identify possible new candidate marker proteins...
Increased expression of human reduced folate carrier in fetal Down syndrome brainG Lubec
Department of Pediatrics, University of Vienna, Vienna, Austria
J Neural Transm Suppl . 2003....
Manifold reduction of moesin in fetal Down syndrome brainB Lubec
Department of Neonatology, University of Vienna, Vienna, A 1090, Austria
Biochem Biophys Res Commun 286:1191-4. 2001..Furthermore, decreased moesin is the second F-actin bundling protein, besides drebrin, that is manifold reduced in fetal DS brain...
The brain in Down syndrome (TRISOMY 21)Gert Lubec
Department of Pediatrics, University of Vienna, Wahringer Gurtel 18 20, 1090 Vienna, Austria
J Neurol 249:1347-56. 2002..Therapeutic modalities that target these factors including antioxidants and caspase inhibitors might have some benefit in alleviating the symptoms of DS...
Proteomics in brain research: potentials and limitationsGert Lubec
Department of Pediatrics, University of Vienna, Wahringer Gurtel 18, A 1090, Vienna, Austria
Prog Neurobiol 69:193-211. 2003..Several other analytical problems need to be overcome, but once the latter problem can be solved, there is nothing to stop the method for a large scale analysis of membrane proteins in neuroscience...
Mitosis-dependent protein expression in neuroblastoma cell line N1E-115Amedeo A Azizi
Department of Pediatrics and Adolescent Medicine, Medical University of Vienna, Wahringer Gurtel 18 20, Vienna, Austria
J Proteome Res 7:3412-22. 2008..Identification of mitosis-dependent proteins is of importance for the interpretation of previous work and for designing future experiments...
Linkage of hippocampal proteins to spatial memory formation and strain-dependence in Apodemus sylvaticus, C57BL/6J and PWD/PhJ miceSudarshan S Patil
Department of Pediatrics, Division of Pediatric Neuroscience, Medical University of Vienna, Wahringer Gurtel 18 20, A 1090 Vienna, Austria
Neurochem Int 56:522-7. 2010..The finding that the neuronal protein NeuN is able to discriminate between good and bad performers in the MWM may be of major interest and may open a new area in the search for protein markers of spatial memory performance...
Mice transgenic for reduced folate carrier: an animal model of Down syndrome?Joachim Höger
Department of Pediatrics and Adolescent Medicine, Medical University of Vienna, Waehringer Guertel 18, 1090 Vienna, Austria
Amino Acids 36:349-57. 2009..Increased crossings in the OF may indicate modulated anxiety-related behavior observed in patients with DS...
Hippocampal levels of phosphorylated protein kinase A (phosphor-S96) are linked to spatial memory enhancement by SGS742Berta Sunyer
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
Hippocampus 19:90-8. 2009..The finding that somatostatin-14 was also induced in the SGS742-treated yoked controls points to a drug side effect, and therefore the role of somatostatin-14 for cognitive enhancement remains open...
Proteome analysis in hippocampus of mice overexpressing human Cu/Zn-superoxide dismutase 1Joo Ho Shin
Department of Pediatrics, Medical University of Vienna, Wahringer Gurtel 18 20, 1090 Vienna, Austria
Neurochem Int 46:641-53. 2005..Our findings suggest that overexpressed SOD1 directly or by generating reactive oxygen species may lead to aberrant protein expressional patterns that in turn may lead to or reflect neurodegeneration observed in this animal model...
Proteins involved in neuronal differentiation of neuroblastoma cell line N1E-115Ji Eun Oh
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
Electrophoresis 28:2009-17. 2007..The study forms the molecular basis for further evaluation of the functional roles of the differentially expressed proteins in ND...
Fluctuations of hippocampal neuronal protein levels over the estrous cycle in the ratWei Fei Diao
Department of Pediatrics, Medical University of Vienna, Waehringer Guertel 18, A 1090 Vienna, Austria
Neurochem Int 52:1002-11. 2008....
Strain-dependent regulation of plasticity-related proteins in the mouse hippocampusDaniela D Pollak
Department of Pediatrics, Division of Pediatric Neuroscience, Medical University of Vienna, , A-1090 Vienna, Austria
Behav Brain Res 165:240-6. 2005..Data presented herein highlight the importance of careful selection of the mouse strain for studies of synaptic plasticity...
Strain-independent global effect of hippocampal proteins in mice trained in the Morris water mazeKongzhao Li
Department of Pediatrics, Medical University of Vienna, Wahringer Gurtel 18 20, 1090, Vienna, Austria
Amino Acids 43:1739-49. 2012..Four proteins verified by immunoblotting could be shown to be involved in training in the MWM as a global effect, independent of the strain tested...
Blocking mTORC1 activity by rapamycin leads to impairment of spatial memory retrieval but not acquisition in C57BL/6J miceAlev Deli
Department of Pediatrics, Medical University of Vienna, Wahringer Gurtel 18, 1090 Vienna, Austria
Behav Brain Res 229:320-4. 2012..The current study extends knowledge on rapamycin in memory mechanisms and challenges work on deeper insights into the role of mTOR in different phases of memory formation and retrieval...
Strain-dependent hippocampal protein levels of GABA(B)-receptor subunit 2 and NMDA-receptor subunit 1Berta Sunyer
Department of Pediatrics, Medical University of Vienna, Wahringer Gurtel 18 20, A 1090 Vienna, Austria
Neurochem Int 55:253-6. 2009..Modification of receptor complex stoichiometry in the hippocampus in turn may well be responsible for cognitive differences observed in spatial memory between mouse strains...
Serine/threonine-protein phosphatase 1 α levels are paralleling olfactory memory formation in the CD1 mouseChristiana Winding
Division of Neuroproteomics, Department of Pediatrics, Medical University of Vienna, Vienna, Austria
Electrophoresis 32:1675-83. 2011..PP-1A is a key signalling element in synaptic plasticity and memory processes and is herein shown to be paralleling olfactory discrimination representing olfactory memory...
Impaired cognitive performance in neuronal nitric oxide synthase knockout mice is associated with hippocampal protein derangementsLiselotte Kirchner
Department of Neonatology, University of Vienna, Wahringer Gurtel 18, A 1090 Vienna, Austria
Nitric Oxide 11:316-30. 2004..We conclude that nNOS knockout mice show impaired spatial performance in the MWM, a finding that may be either linked to direct effects of nNOS/NO and/or to specific hippocampal protein derangements...
Cognitive enhancement by SGS742 in OF1 mice is linked to specific hippocampal protein expressionBerta Sunyer
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
J Proteome Res 7:5237-53. 2008..Significantly different protein spots were identified by two mass spectrometry principles, nano-LC-ESI-MS/MS and by nano-LC-ESI(CID/ETD)-MS/MS. Signaling, chaperone and metabolic enzyme proteins were linked to memory enhancement...
Differential protein levels and post-translational modifications in spinal cord injury of the ratLeila Afjehi-Sadat
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
J Proteome Res 9:1591-7. 2010..The findings propose the involvement of the corresponding cascades and challenge further work into aberrant signaling and oxidative stress in SCI, which may form the basis for experimental intervention for spinal cord trauma...
Complete sequencing of GABAA receptor subunit beta 3 by a rapid technique following in-gel digestion of the proteinSung Ung Kang
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
Electrophoresis 30:2159-67. 2009..It was observed that the use of trypsin, chymotrypsin and Asp-N with bioinformatic handling by the MASCOT and Modiro software is sufficient to obtain complete sequencing of a highly hydrophobic membrane protein...
Protein levels of alpha1-tubulin, protein disulfide isomerase, tropomyosins and vimentin are regulated by the tuberous sclerosis gene productsMarkus Hengstschlager
Obstetrics and Gynecology, University of Vienna, Prenatal Diagnosis and Therapy, Wahringer Gurtel 18 20, A 1090 Vienna, Austria
Cancer Lett 210:219-26. 2004....
Modulation of the hippocampal protein machinery in voluntary and treadmill exercising ratsWei Qiang Chen
Medical University of Vienna, Department of Pediatrics, Waehringer Guertel 18, A 1090 Vienna, Austria
Biochim Biophys Acta 1784:555-62. 2008..005 was considered as statistically significant thus respecting multiple testing. The biological meaning of changed protein levels in hippocampus under different conditions of exercise is not known but warrants further investigation...
Dysregulation of growth factor receptor-bound protein 2 and fascin in hippocampus of mice polytransgenic for chromosome 21 structuresJoo Ho Shin
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
Hippocampus 17:1180-92. 2007..Fascin dysregulation is of relevance for actin bundling in vesicle trafficking and may represent or lead to impaired neurotransmission that, in turn, may lead to the cognitive defect observed in this mouse model of Down syndrome...
Evaluation of spatial memory of C57BL/6J and CD1 mice in the Barnes maze, the Multiple T-maze and in the Morris water mazeSudarshan S Patil
Department of Pediatrics, Medical University of Vienna, Waehringer Guertel 18 20, A 1090 Vienna, Austria
Behav Brain Res 198:58-68. 2009....
Neurotrophin 3/TrkC-regulated proteins in the human medulloblastoma cell line DAOYMariella Gruber-Olipitz
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
Electrophoresis 30:540-9. 2009..Knowledge on effectors of TrkC signaling may represent a first useful step for the identification of marker candidates or reflecting probable pharmacological targets for specific treatment of MB...
p27Kip1 localization depends on the tumor suppressor protein tuberinMargit Rosner
Medical Genetics, Obstetrics and Gynecology, Medical University of Vienna, Wahringer Gurtel 18 20, 1090 Vienna, Austria
Hum Mol Genet 16:1541-56. 2007..These findings demonstrate p27 localization during the mammalian cell cycle to be under the control of the tumor suppressor tuberin...
Protein chemical identification and characterization of the human variants of far upstream element binding protein in medulloblastoma DAOY cell lineEphrem Engidawork
Department of Pediatrics, Medical University of Vienna, A-1090, Vienna, Austria
Int J Oncol 29:721-36. 2006..These findings open up an exciting possibility for discerning the cellular roles of FAB in tumor biology...
Mass spectrometrical analysis of the mitochondrial carrier Aralar1 from mouse hippocampusSeok Heo
Department of Pediatrics and Adolescent Medicine, Medical University of Vienna, Vienna, Austria
Electrophoresis 31:1813-21. 2010....
Mass spectrometrical characterisation of mouse and rat synapsin isoforms 2a and 2bSung Ung Kang
Department of Pediatrics, Medical University of Vienna, Waehringer Guertel 18, 1090, Vienna, Austria
Amino Acids 38:1131-43. 2010..These findings are important for interpretation of previous results and design of future studies on synapsins...
Proteins linked to extinction in contextual fear conditioning in the C57BL/6J mouseLin Li
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
Proteomics 11:3706-24. 2011..Moreover, it is intriguing to demonstrate the differences between good and poor extinction performance at the protein level...
Derangement of hypothetical proteins in fetal Down's syndrome brainJoo Ho Shin
Department of Pediatrics, University of Vienna, Vienna, Austria
Neurochem Res 29:1307-16. 2004..05) in fetal DS brain, and domain analysis suggests involvement in cytoskeleton, signaling, and chaperone system abnormalities...
Protein dysregulation in mouse hippocampus polytransgenic for chromosome 21 structures in the Down Syndrome Critical RegionJoo Ho Shin
Department of Pediatrics, Division of Neuroproteomics, Medical University of Vienna, Austria
J Proteome Res 5:44-53. 2006....
Large-scale identification of cytosolic mouse brain proteins by chromatographic prefractionationJoo-Ho Shin
Department of Pediatrics, Medical University of Vienna, Austria
Electrophoresis 27:2799-813. 2006..The results represent so far the largest database of mouse brain proteins and provide valuable information for the design of proteomic studies in the mouse...
Bach2 is involved in neuronal differentiation of N1E-115 neuroblastoma cellsKi Shuk Shim
Medical Genetics, Obstetrics and Gynecology, Medical University of Vienna, Wahringer Gurtel 18 20, A 1090 Vienna, Austria
Exp Cell Res 312:2264-78. 2006..It would have negative effects on proliferation and differentiation of these cells. In differentiated neuronal cells Bach2 expression is upregulated, which could allow Bach2 to function as a gatekeeper of the differentiated status...
Hippocampal signaling cascades are modulated in voluntary and treadmill exercise ratsWei Qiang Chen
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
Electrophoresis 28:4392-400. 2007..These results form the basis for functional studies elucidating mechanisms and links between exercise and hippocampal signaling and function...
Hippocampal signaling protein levels are different in early and late metestrus in the ratWei Fei Diao
Department of Pediatrics, Medical University of Vienna, Waehringer Guertel 18, A 1090, Vienna, Austria
Biochim Biophys Acta 1774:1044-51. 2007..Moreover, signaling differences in hippocampus are challenging cognitive studies during these two metestrus phases probably revealing cognitive differences between early and late metestrus...
Tuberin--a new molecular target in Alzheimer's disease?Rosa Ferrando-Miguel
Medical Genetics, Obstetrics and Gynecology, Medical University of Vienna, General Hospital, 1090, Wahringer Gurtel 18 20, Vienna, 1090, Austria
Neurochem Res 30:1413-9. 2005..This first connection of tuberin to another common disease beside TSC stimulates new approaches to investigate the molecular development and to establish new therapeutic strategies...
Changes of hippocampal signaling protein levels during postnatal brain development in the ratRachel Weitzdörfer
Department of Pediatrics and Adolescent Medicine, Medical University of Vienna, Vienna, Austria
Hippocampus 18:807-13. 2008..These data contribute to the understanding that different time points may use different signaling cascades...
Hippocampal synapsin isoform levels are linked to spatial memory enhancement by SGS742Julius Paul Pradeep John
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
Hippocampus 19:731-8. 2009....
Hippocampal protein levels related to spatial memory are different in the Barnes maze and in the multiple T-mazeJun Fang Zheng
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
J Proteome Res 8:4479-86. 2009..Protein levels were linked to spatial memory specifically as yoked controls were used...
Complete sequencing of the recombinant granulocyte-colony stimulating factor (filgrastim) and detection of biotinylation by mass spectrometryKareem Eldin A M Ahmed
Department of Pediatrics, Medical University of Vienna, Waehringer Guertel 18, 1090, Vienna, Austria
Amino Acids 38:1043-9. 2010..Although there is some evidence that biotinylated G-CSF analogues are active, it remains open whether this modification may be responsible for the side effects observed or lead to changes of antigenicity...
Alzheimer's disease risk factor lymphocyte-specific protein tyrosine kinase regulates long-term synaptic strengthening, spatial learning and memoryEun Jung Kim
Department of Neurophysiology and Neuropharmacology, Center for Physiology and Pharmacology, Medical University of Vienna, Schwarzspanierstrasse 17, I, 1090, Vienna, Austria
Cell Mol Life Sci 70:743-59. 2013..These data provide the basis for the functional characterization of brain Lck, describing the importance of Lck as a critical regulator of both neuronal morphology and in vivo long-term memory...
Mass spectrometrical analysis of bilin-binding protein from the wing of Hebomoia glaucippe (Linnaeus, 1758) (Lepidoptera: Pieridae)Narkhyun Bae
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
Electrophoresis 33:1787-94. 2012..The role of the PTMs remains elusive but nitration, in analogy to nitration effects reported in literature, proposes a role for mechanoelastic proteins and protein-protein interactions...
Proteins linked to spatial memory formation of CD1 mice in the multiple T-mazeSudarshan S Patil
Department of Pediatrics, Medical University of Vienna, Wahringer Gurtel 18, 1090 Vienna, Austria
Hippocampus 22:1075-86. 2012..Differential protein expression in trained vs. yoked mice and in good and no-performers may allow insight into spatial memory formation as well as represent tentative pharmacological targets...
Mass spectrometric identification of serine hydrolase OVCA2 in the medulloblastoma cell line DAOYAmedeo A Azizi
Department of Pediatrics, Medical University of Vienna, Währinger Gürtel 19 21, A 1090 Vienna, Austria
Cancer Lett 241:235-49. 2006..In addition to the presence of OVCA2 in medulloblastoma, it was furthermore detectable in three out of 10 human tumour cell-lines as a high abundance protein probably suggesting a role in the tumour biology...
Complete sequencing and oxidative modification of manganese superoxide dismutase in medulloblastoma cellsJulius Paul Pradeep John
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
Electrophoresis 30:3006-16. 2009..The findings of different PTMs in the same gel represent Mn-SOD oxidative states, while oxidative modification of His30 and 31 may even reflect decreased Mn-SOD activity...
Life-long effects of perinatal asphyxia on stress-induced proteins and dynamin 1 in rat brainErwin Kitzmueller
Department of Pediatrics, University of Vienna, Vienna, Austria
Neurochem Res 29:1767-77. 2004..Decreased dynamin-1 levels may be considered as a long-term effect on the exocytotic system possibly reflecting or leading to impaired neuronal transport and vesicle-trafficking in PA of the rat of advanced age...
Mass spectrometric studies on mouse hippocampal synapsins Ia, IIa, and IIb and identification of a novel phosphorylation site at serine-546Julius Paul Pradeep John
Department of Pediatrics, Medical University of Vienna, Waehringer Guertel 18, 1090 Vienna, Austria
J Proteome Res 6:2695-710. 2007..Several serine phosphorylation sites were confirmed, and a novel phosphorylation site was observed at Ser-546 in synapsin IIa in all gels analyzed...
Tuberous sclerosis genes regulate cellular 14-3-3 protein levelsMarkus Hengstschlager
Obstetrics and Gynecology, University of Vienna, Prenatal Diagnosis and Therapy, Wahringer Gurtel 18 20, Vienna A 1090, Austria
Biochem Biophys Res Commun 312:676-83. 2003..These data provide important new insights into the molecular development of this disease especially since both, the TSC genes and the 14-3-3 proteins, are known to be involved in mammalian cell cycle control...
Focal adhesion kinase regulates neuronal growth, synaptic plasticity and hippocampus-dependent spatial learning and memoryFrancisco J Monje
Department of Neurophysiology and Neuropharmacology, Center for Physiology and Pharmacology, Vienna, Austria
Neurosignals 20:1-14. 2012..Our data indicate that FAK has a growth-promoting effect, is importantly involved in the regulation of the synaptic function and mediates in vivo hippocampus-dependent spatial learning and memory...
A serotonin receptor 1A containing complex in hippocampus of PWD/PhJ mice is linked to training effects in the Barnes mazeSeok Heo
Department of Pediatrics, Medical University of Vienna, Wahringer Gurtel 18 20, A 1090 Vienna, Austria
Behav Brain Res 216:389-95. 2011..This observation shows that a specific complex rather than a receptor subunit as previously shown is involved in memory process and the receptor protein was characterized...
Mass spectrometrical identification of hippocampal NMDA receptor subunits NR1, NR2A-D and five novel phosphorylation sites on NR2A and NR2BMaryam Ghafari
Department of Pediatrics, Medical University of Vienna, Währinger Gürtel 18 1090 Vienna, Austria
J Proteome Res 11:1891-6. 2012..Herein, findings of novel phosphorylation sites are extending knowledge on chemical characterization of the NMDA-R and warrant studying function of site-specific receptor phosphorylation in health and disease...
Differences in hippocampal protein levels between C57Bl/6J, PWD/PhJ, and Apodemus sylvaticus are paralleled by differences in spatial memorySudarshan S Patil
Department of Pediatrics, Medical University of Vienna, Austria
Hippocampus 21:714-23. 2011..The experimental approach, however, does not allow discriminating between differences in protein levels a priori and different protein levels induced by the MWM testing. © 2010 Wiley-Liss, Inc...
Mass spectrometrical characterization of NDRG2 protein (N-myc-downstream regulated gene 2) and description of two novel phosphorylation sitesWei Qiang Chen
Department of Pediatrics, Medical University of Vienna, Waehringer Guertel 18, 1090 Vienna, Austria
Neurochem Res 32:1969-77. 2007....
Extravasation of plasma proteins can confound interpretation of proteomic studies of brain: a lesson from apo A-I in mesial temporal lobe epilepsyJae-Won Yang
Department of Pediatrics, Medical University of Vienna, Waehringer Guertel 18, A-1090 Vienna, Austria
Brain Res Mol Brain Res 139:348-56. 2005..Care has to be taken when protein expressional findings are to be interpreted in the presence of plasma proteins, including apo A-I, thus clearly representing a confounding factor...
Contribution of human amniotic fluid stem cells to renal tissue formation depends on mTORNicol Siegel
Institute of Medical Genetics, Medical University of Vienna, Währinger Strasse 10, 1090 Vienna, Austria
Hum Mol Genet 19:3320-31. 2010....
Serotonin(1A)-receptor-dependent signaling proteins in mouse hippocampusLin Li
Department of Pediatrics, Medical University of Vienna, Wahringer Gurtel 18 20, A 1090 Vienna, Austria
Neuropharmacology 57:556-66. 2009..Reduced SP levels along with findings of two novel phosphorylation sites may be relevant for interpretation of previous and the design of future studies on this receptor system...
Inhibition of oligodendrocyte precursor cell differentiation by myelin-associated proteinsYasir A Syed
Department of Pediatrics, Medical University of Vienna, Austria
Neurosurg Focus 24:E5. 2008..The aim of the present study was to characterize the nature of the inhibitory molecules present in myelin...
Behavioral testing upregulates pCaMKII, BDNF, PSD-95 and egr-1 in hippocampus of FVB/N miceDaniela D Pollak
Department of Pediatrics, Division of Pediatric Neuroscience, Medical University of Vienna, Waehringer Guertel 18 20, A 1090 Vienna, Austria
Behav Brain Res 163:128-35. 2005..Detection of significantly increased pCaMKII, BDNF, PSD-95 and egr-1 induced by behavioral training at the protein level per se is intriguing and supports the proposed importance of these molecules for neuronal information storage...
The cognitive enhancer SGS742 does not involve major known signaling cascades in OF1 miceBerta Sunyer
Department of Pediatrics, Medical University of Vienna, Wahringer Gurtel 18 20, Vienna 1090, Austria
Neurochem Res 33:1384-92. 2008....
A gel-based proteomic method reveals several protein pathway abnormalities in fetal Down syndrome brainYanwei Sun
Department of Pediatrics, Neuroproteomics Division, Medical University of Vienna, Vienna, Austria
J Proteomics 74:547-57. 2011..Taken together, aberrant protein levels from several pathways in fetal DS are challenging as well as fertilizing the area of research and providing the basis for additional neurochemical and functional studies...
Myelin-mediated inhibition of oligodendrocyte precursor differentiation can be overcome by pharmacological modulation of Fyn-RhoA and protein kinase C signallingAlexandra S Baer
Department of Neurosurgery, Medical University Vienna, Vienna, Austria
Brain 132:465-81. 2009....
Involvement of individual hippocampal signaling protein levels in spatial memory formation is strain-dependentSudarshan S Patil
Division of Pediatric Neuroscience, Department of Pediatrics, Medical University of Vienna, Wahringer Gurtel 18 20, 1090, Vienna, Austria
Amino Acids 39:75-87. 2010..It is intriguing that individual mouse strains, laboratory or wild caught, may use different signaling pathways for spatial memory in the Morris water maze...
Increased RNA levels of the 25 kDa synaptosomal associated protein in brain samples of adult patients with Down SyndromeSusanne Greber-Platzer
Department of Pediatrics, University of Vienna, Wahringer Gurtel 18 20, 1090 Vienna, Austria
Neurosci Lett 336:77-80. 2003..We suggest compensatory mechanisms for the upregulation at the transcriptional level. We propose that SNAP-25 as many other brain proteins are regulated by protein stability rather than at the mRNA level...
Proteome profiling in the rat Harderian glandJae-Won Yang
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
J Proteome Res 5:1751-62. 2006....
Cerebellar protein expression in three different mouse strains and their relevance for motor performanceDaniela Pollak
Department of Pediatrics, Division of Basic Science, Medical University of Vienna, , A-1090 Vienna, Austria
Neurochem Int 46:19-29. 2005....
Gel-based mass spectrometric analysis of a strongly hydrophobic GABAA-receptor subunit containing four transmembrane domainsSung Ung Kang
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
Nat Protoc 4:1093-102. 2009..The protocol takes approximately 10 d to complete and may represent a step forward in the complex analysis of other membrane or hydrophobic proteins...
Estrous-cycle-dependent hippocampal levels of signaling proteinsWei Fei Diao
Department of Pediatrics, Medical University of Vienna, Waehringer Guertel 18, A 1090, Vienna, Austria
Hippocampus 17:563-76. 2007..Results from this study, although increasing complexity of protein knowledge, may help to design further investigations at the protein level and may assist to interpret literature on protein expression and brain protein levels...
Synthesis, chaperoning, and metabolism of proteins are regulated by NT-3/TrkC signaling in the medulloblastoma cell line DAOYMariella Gruber-Olipitz
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
J Proteome Res 7:1932-44. 2008..Protein levels of translational, splicing, processing, chaperone, protein handling, and metabolism machineries were shown to depend on neurotrophin-3-induced TrkC activation probably representing pharmacological targets...
Structural and functional analysis of hypothetical proteins in mouse hippocampus from two-dimensional gel electrophoresisLeila Afjehi Sadat
Department of Pediatrics, Medical University of Vienna, Waehringer Guertel 18 20, A 1090 Vienna, Austria
J Proteome Res 6:711-23. 2007..Three identified HPs were extracted from gels and renatured, and pyridoxal phosphate phosphatase, inorganic pyrophosphate phosphatase, and antioxidant activities were revealed, findings in agreement with functional predictions...
Hypothetical proteins with putative enzyme activity in human amnion, lymphocyte, bronchial epithelial and kidney cell linesLeila Afjehi-Sadat
Department of Pediatrics, Division of Basic Science, University of Vienna, Wahringer Gurtel 18, A 1090 Vienna, Austria
Biochim Biophys Acta 1700:65-74. 2004..Furthermore, analytical data given are of major relevance as pIs, a prerequisite to find proteins in a map, cannot be predicted from nucleic acid sequences...
Molecular diversity of rat brain proteins as revealed by proteomic analysisJae-Won Yang
Department of Pediatrics, University of Vienna, Vienna, Austria
Mol Divers 9:385-96. 2005....
Long-term effect of moderate and profound hypothermia on morphology, neurological, cognitive and behavioural functions in a rat model of perinatal asphyxiaH Hoeger
Institute for Animal Breeding, Medical University of Vienna, Vienna, Austria
Amino Acids 31:385-96. 2006..Intrahypoxic hypothermia was able to protect the rat from the devastating effect of perinatal asphyxia not in morphological, but in functional terms...
Proteome analysis of primary neurons and astrocytes from rat cerebellumJae-Won Yang
Department of Pediatrics, Medical University of Vienna, Waehringer Guertel 18-20, A-1090 Vienna, Austria
J Proteome Res 4:768-88. 2005..The concomitant expressional patterns of several protein classes are given and potential neuronal and astrocytic marker candidates are presented...
Proteomic evaluation of intermediary metabolism enzyme proteins in fetal Down's syndrome cerebral cortexMichal Bajo
University of Vienna, Department of Pediatrics, Vienna, Austria
Proteomics 2:1539-46. 2002..These results suggest derangement of intermediary metabolism during prenatal development of DS individuals...
Using the quantitative competitive RT-PCR technique to analyze minute amounts of different mRNAs in small tissue samplesSusanne Greber-Platzer
Division of Pediatric Cardiology, Department of Pediatrics, University of Vienna, Austria
Methods Mol Biol 193:29-58. 2002
Aberrant expression of centractin and capping proteins, integral constituents of the dynactin complex, in fetal down syndrome brainTalin Gulesserian
Department of Pediatrics, University of Vienna, Waehringer Guertel 18, Vienna, A-1090, Austria
Biochem Biophys Res Commun 291:62-7. 2002..Deranged centractins and F-actin capping proteins may represent or induce deficient axonal transport and may well contribute to deterioration of the cytoskeleton's mitotic functions in trisomy 21...
Mass spectrometrical identification of brain proteins including highly insoluble and transmembrane proteinsAnna Bierczynska-Krzysik
Department of Pediatrics, Medical University of Vienna, Waehringer Guertel 18, A-1090 Vienna, Austria
Neurochem Int 49:245-55. 2006..The fact that transmembrane, basic, acidic as well as hydrophobic proteins with a positive Gravy Index can be resolved warrants work on further improvement of this analytical tool...
Aberrant expression of peroxiredoxin subtypes in neurodegenerative disordersKurt Krapfenbauer
F Hoffman La Roche, Basel, Switzerland
Brain Res 967:152-60. 2003..Moreover, while up-regulation of Prx II appears to provide evidence for the existence of compensatory response in increased cell loss, up-regulation of Prx VI may be used to discriminate PD from AD as well as DS...
Human brain cytosolic histamine-N-methyltransferase is decreased in Down syndrome and increased in Pick's diseaseSeong Hwan Kim
Department of Pediatrics, University of Vienna, Waehringer Guertel 18, A 1090 Vienna, Austria
Neurosci Lett 321:169-72. 2002..Decreased HMT in DS would be compatible with findings of decreased histamine synthesis, thus reflecting a compensation mechanism to antagonize reduced synthesis by decreased degradation...
Drebrin, a dendritic spine protein, is manifold decreased in brains of patients with Alzheimer's disease and Down syndromeKi Shuk Shim
Department of Pediatrics, University of Vienna, Waehringer Guertel 18, A 1090 Vienna, Austria
Neurosci Lett 324:209-12. 2002..Reduced drebrin could be responsible for or representing the loss of spine plasticity in DS and may be a useful indicator for the impaired arborization in neurodegenerative disorders...
Reduced levels of DEAD-box proteins DBP-RB and p72 in fetal Down syndrome brainsSusanne G Kircher
Institute of Medical Chemistry, University of Vienna, Austria
Neurochem Res 27:1141-6. 2002....
Human brain nascent polypeptide-associated complex alpha subunit is decreased in patients with Alzheimer' s disease and Down syndromeSeong Hwan Kim
Department of Pediatrics, University of Vienna, Austria
J Investig Med 50:293-301. 2002..Decreased alpha-NAC may result in the mistargeting, mistranslation, and proteolysis of proteins by affecting overall NAC function...
Expression patterns of antioxidant proteins in brains of patients with sporadic Creutzfeldt-Jacob diseaseKurt Krapfenbauer
F. Hoffmann-La Roche Ltd, Pharmaceuticals Division, Basel, Switzerland
Electrophoresis 23:2541-7. 2002....
Overexpressed protein disulfide isomerase in brains of patients with sporadic Creutzfeldt-Jakob diseaseByong Chul Yoo
Department of Pediatrics, University of Vienna, Waehringer Guertel 18, A-1090 Vienna, Austria
Neurosci Lett 334:196-200. 2002..Overexpression of PDI protein in sCJD brain may simply reflect a cellular defense response against the altered prion protein...
Proteomic analysis of the fetal brainMichael Fountoulakis
Center for Medical Genomics, F Hoffmann La Roche, Basel, Switzerland
Proteomics 2:1547-76. 2002..It may be a useful tool in the investigation of protein changes in neurodegenerative diseases early in life...
Expression of hypothetical proteins in human fetal brain: increased expression of hypothetical protein 28.5kDa in Down syndrome, a clue for its tentative roleEphrem Engidawork
Department of Pediatrics, University of Vienna, , A-1090 Vienna, Austria
Mol Genet Metab 78:295-301. 2003..5kDa was significantly elevated (P<0.05) in fetal Down syndrome. This finding offers an important clue that a hypothetical protein might be involved in the pathomechanisms of brain abnormality in Down syndrome...
Detection of hypothetical proteins in human fetal perireticular nucleusFelix Hepner
Department of Pediatrics, Medical University of Vienna, Austria
J Proteome Res 4:2379-85. 2005..The existence of formerly HP proteins in the PN of human fetal brain is shown, thus extending knowledge of the brain proteome and proposing the method used as a suitable analytical tool for searching HP...
Strain-dependent expression of signaling proteins in the mouse hippocampusD D Pollak
Department of Pediatrics, Division of Pediatric Neuroscience, Medical University of Vienna, , A-1090 Vienna, Austria
Neuroscience 138:149-58. 2006..Moreover, these data highlight the importance of the genetic background for the analysis of signaling pathways in the hippocampus in wild-type mice as well as in gene-targeting experiments...
Proteomic analysis of the mouse brain following protein enrichment by preparative electrophoresisElena Xixi
Academy of Athens, Foundation for Biomedical Research, Division of Biotechnology, Athens, Greece
Electrophoresis 27:1424-31. 2006..Preparative electrophoresis is an efficient method for the enrichment of proteins of low molecular mass and may be useful in the investigation of disorders of the central nervous system...
Nitric oxide and oxygen radical attack on GDP-dissociation inhibitor 2 (GDI-2) in spinal cord injury of the ratJulius Paul Pradeep John
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
J Proteome Res 6:1500-9. 2007..On the basis of mass spectrometry evidence, we conclude that lipid-peroxidation and protein nitration do take place on an important signalling protein that may be prevented by specific experimental therapeutic interventions...
Changes of hippocampal protein levels during postnatal brain development in the ratRachel Weitzdörfer
Medical University of Vienna, Department of Neonatology, Vienna, Austria
J Proteome Res 5:3205-12. 2006..g., antioxidant, metabolic, cytoskeleton, proteasomal, and chaperone pathways were developmentally regulated, which is relevant for design and interpretation of protein chemical studies in the mammalian brain...
Possible dysregulation of chaperon and metabolic proteins in cystic fibrosis bronchial tissueThomas Frischer
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
Proteomics 6:3381-8. 2006..005). Aberrant protein levels may reflect molecular changes of CF as well as CF-linked inflammation, infection and cellular stress response...
An integrated map of the murine hippocampal proteome based upon five mouse strainsDaniela D Pollak
Department of Pediatrics, Division of Pediatric Neuroscience, Medical University of Vienna, Austria
Electrophoresis 27:2787-98. 2006..Proteomic profiling of the hippocampus, a brain region with a pivotal role for neuronal information processing and storage may provide insight into the characteristics of proteins serving this highly sophisticated function...
Mass spectrometrical verification of stomatin-like protein 2 (SLP-2) primary structureJulius Paul Pradeep John
Department of Pediatrics, Medical University of Vienna, Vienna, Austria
Proteins 64:543-51. 2006..SLP-2 is a high abundance protein in several tissues and cells and may play an important biological role and therefore characterization of its primary structure is of importance...
Components of the protein quality control system are expressed in a strain-dependent manner in the mouse hippocampusDaniela D Pollak
Department of Pediatrics, Division of Pediatric Neuroscience, Medical University of Vienna, , A-1090 Vienna, Austria
Neurochem Int 49:500-7. 2006..The findings are useful for designing future studies on these cascades and interpretation of results show that data on brain protein levels cannot be simply extrapolated among different mouse strains...
Identification of enzymes and activity from two-dimensional gel electrophoresisLeila Afjehi Sadat
Department of Pediatrics, Medical University of Vienna, Waehringer Guertel 18, 1090 Vienna, Austria
Nat Protoc 2:2318-24. 2007....
Fetal Down syndrome brains exhibit aberrant levels of neurotransmitters critical for normal brain developmentNigel Whittle
Department of Pharmacology and Toxicology, Institute of Pharmacy and Center for Molecular Biosciences, University of Innsbruck, Innsbruck, Austria
Pediatrics 120:e1465-71. 2007..However, mechanisms that underlie the observed dysfunctional brain development in Down syndrome are not clear...
A rat brain protein expression map including cytosolic and enriched mitochondrial and microsomal fractionsKurt Krapfenbauer
Department of Pediatrics, University of Vienna, Vienna, Austria
Electrophoresis 24:1847-70. 2003..Using fractionations of brain homogenates we were able to improve the power of the method on forming the basis for brain protein expressional studies and providing a reference map as a powerful tool for the neuroscientist...
Protein profiles of medulloblastoma cell lines DAOY and D283: identification of tumor-related proteins and principlesAndreas Peyrl
University of Vienna, Department of Pediatrics, Vienna, Austria
Proteomics 3:1781-800. 2003..The antiapoptotic principle, Ded protein, found in both cell lineages may stand for immortalization but could also determine malignancy per se in medulloblastoma...
