Andreas W Schreiber

Summary

Affiliation: University of Adelaide
Country: Australia

Publications

  1. pmc Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat
    Andreas W Schreiber
    Australian Centre for Plant Functional Genomics, Univ of Adelaide, PMB 1 Glen Osmond, SA 5064, Australia
    BMC Genomics 13:492. 2012
  2. ncbi A framework for gene expression analysis
    Andreas W Schreiber
    Australian Centre for Plant Functional Genomics, Hartley Grove, PMB 1 Waite Campus, The University of Adelaide Glen Osmond 5064, Australia
    Bioinformatics 23:191-7. 2007
  3. pmc Combining transcriptional datasets using the generalized singular value decomposition
    Andreas W Schreiber
    Australian Centre for Plant Functional Genomics, School of Agriculture and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA 5064, Australia
    BMC Bioinformatics 9:335. 2008
  4. pmc Comparative transcriptomics in the Triticeae
    Andreas W Schreiber
    Australian Centre for Plant Functional Genomics, Univ of Adelaide, PMB 1 Glen Osmond, SA 5064, Australia
    BMC Genomics 10:285. 2009
  5. pmc Discovery of barley miRNAs through deep sequencing of short reads
    Andreas W Schreiber
    Australian Centre for Plant Functional Genomics, The University of Adelaide, South Australia 5064, Australia
    BMC Genomics 12:129. 2011
  6. pmc Cell-specific vacuolar calcium storage mediated by CAX1 regulates apoplastic calcium concentration, gas exchange, and plant productivity in Arabidopsis
    Simon J Conn
    School of Agriculture, Food, and Wine, University of Adelaide, Glen Osmond, South Australia 5064, Australia
    Plant Cell 23:240-57. 2011
  7. pmc Sequencing error correction without a reference genome
    Julie A Sleep
    Australian Centre for Plant Functional Genomics, The University of Adelaide, Urrbrae, SA 5064, Australia
    BMC Bioinformatics 14:367. 2013
  8. pmc A comparative analysis of algorithms for somatic SNV detection in cancer
    Nicola D Roberts
    School of Molecular and Biomedical Science and School of Mathematical Sciences, University of Adelaide, South Australia, Australia
    Bioinformatics 29:2223-30. 2013

Detail Information

Publications8

  1. pmc Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat
    Andreas W Schreiber
    Australian Centre for Plant Functional Genomics, Univ of Adelaide, PMB 1 Glen Osmond, SA 5064, Australia
    BMC Genomics 13:492. 2012
    ..Here we report on an alternate approach, a direct homoeolog-specific assembly of the expressed portion of the genome, the transcriptome...
  2. ncbi A framework for gene expression analysis
    Andreas W Schreiber
    Australian Centre for Plant Functional Genomics, Hartley Grove, PMB 1 Waite Campus, The University of Adelaide Glen Osmond 5064, Australia
    Bioinformatics 23:191-7. 2007
    ..To improve this situation, a better understanding of the expected relationships between expression profiles of genes associated by biological function is required...
  3. pmc Combining transcriptional datasets using the generalized singular value decomposition
    Andreas W Schreiber
    Australian Centre for Plant Functional Genomics, School of Agriculture and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA 5064, Australia
    BMC Bioinformatics 9:335. 2008
    ..These difficulties are exacerbated if there is only partial overlap between the experimental conditions and genes probed in the two datasets...
  4. pmc Comparative transcriptomics in the Triticeae
    Andreas W Schreiber
    Australian Centre for Plant Functional Genomics, Univ of Adelaide, PMB 1 Glen Osmond, SA 5064, Australia
    BMC Genomics 10:285. 2009
    ..The advent of two genome-scale Affymetrix GeneChips now allows studies of the comparison of their transcriptomes...
  5. pmc Discovery of barley miRNAs through deep sequencing of short reads
    Andreas W Schreiber
    Australian Centre for Plant Functional Genomics, The University of Adelaide, South Australia 5064, Australia
    BMC Genomics 12:129. 2011
    ..However, miRNAs from barley, one of the most important cereal crops, remain unknown...
  6. pmc Cell-specific vacuolar calcium storage mediated by CAX1 regulates apoplastic calcium concentration, gas exchange, and plant productivity in Arabidopsis
    Simon J Conn
    School of Agriculture, Food, and Wine, University of Adelaide, Glen Osmond, South Australia 5064, Australia
    Plant Cell 23:240-57. 2011
    ..We establish CAX1 as a key regulator of apoplastic [Ca(2+)] through compartmentation into mesophyll vacuoles, a mechanism essential for optimal plant function and productivity...
  7. pmc Sequencing error correction without a reference genome
    Julie A Sleep
    Australian Centre for Plant Functional Genomics, The University of Adelaide, Urrbrae, SA 5064, Australia
    BMC Bioinformatics 14:367. 2013
    ..Identifying sequencing errors from true biological variants is a challenging task. For organisms without a reference genome this difficulty is even more challenging...
  8. pmc A comparative analysis of algorithms for somatic SNV detection in cancer
    Nicola D Roberts
    School of Molecular and Biomedical Science and School of Mathematical Sciences, University of Adelaide, South Australia, Australia
    Bioinformatics 29:2223-30. 2013
    ..The candidate SNV sites returned by each algorithm are filtered to remove likely false positives, then characterized and compared to investigate the strengths and weaknesses of each SNV calling algorithm...