A Harvey Millar

Summary

Affiliation: University of Western Australia
Country: Australia

Publications

  1. ncbi request reprint The cytotoxic lipid peroxidation product, 4-hydroxy-2-nonenal, specifically inhibits decarboxylating dehydrogenases in the matrix of plant mitochondria
    A H Millar
    Plant Sciences Group, Department of Biochemistry, The University of Western Australia, Nedlands, Australia
    FEBS Lett 481:117-21. 2000
  2. ncbi request reprint Unraveling the role of mitochondria during oxidative stress in plants
    H Millar
    Department of Biochemistry, Faculty of Medicine and Dentistry, The University of Western Australia, Crawley, Australia
    IUBMB Life 51:201-5. 2001
  3. pmc ModuleFinder and CoReg: alternative tools for linking gene expression modules with promoter sequences motifs to uncover gene regulation mechanisms in plants
    Kathryn E Holt
    ARC Centre of Excellence in Plant Energy Biology, CMS Building M310 University of Western Australia, 35 Stirling Highway, Crawley 6009, Western Australia, Australia
    Plant Methods 2:8. 2006
  4. ncbi request reprint The plant mitochondrial proteome
    A Harvey Millar
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, University of Western Australia, Crawley 6009, W A, Australia
    Trends Plant Sci 10:36-43. 2005
  5. pmc Genomic and proteomic analysis of mitochondrial carrier proteins in Arabidopsis
    A Harvey Millar
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Western Australia, Australia
    Plant Physiol 131:443-53. 2003
  6. ncbi request reprint Changes in the mitochondrial proteome during the anoxia to air transition in rice focus around cytochrome-containing respiratory complexes
    A Harvey Millar
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Western Australia, Australia
    J Biol Chem 279:39471-8. 2004
  7. pmc Analysis of the Arabidopsis mitochondrial proteome
    A H Millar
    Department of Biochemistry, Faculty of Medicine and Dentistry, The University of Western Australia, Crawley, Australia
    Plant Physiol 127:1711-27. 2001
  8. ncbi request reprint Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana
    Rachel Clifton
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley, Western Australia, Australia
    Plant Mol Biol 58:193-212. 2005
  9. pmc Remodeled respiration in ndufs4 with low phosphorylation efficiency suppresses Arabidopsis germination and growth and alters control of metabolism at night
    Etienne H Meyer
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia
    Plant Physiol 151:603-19. 2009
  10. doi request reprint Functional and composition differences between mitochondrial complex II in Arabidopsis and rice are correlated with the complex genetic history of the enzyme
    Shaobai Huang
    ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, M316, Crawley, WA, 6009, Australia
    Plant Mol Biol 72:331-42. 2010

Collaborators

Detail Information

Publications100

  1. ncbi request reprint The cytotoxic lipid peroxidation product, 4-hydroxy-2-nonenal, specifically inhibits decarboxylating dehydrogenases in the matrix of plant mitochondria
    A H Millar
    Plant Sciences Group, Department of Biochemistry, The University of Western Australia, Nedlands, Australia
    FEBS Lett 481:117-21. 2000
    ..The significance of the effect of these inhibitions on the impact of lipid peroxidation and plant respiratory functions is discussed...
  2. ncbi request reprint Unraveling the role of mitochondria during oxidative stress in plants
    H Millar
    Department of Biochemistry, Faculty of Medicine and Dentistry, The University of Western Australia, Crawley, Australia
    IUBMB Life 51:201-5. 2001
    ....
  3. pmc ModuleFinder and CoReg: alternative tools for linking gene expression modules with promoter sequences motifs to uncover gene regulation mechanisms in plants
    Kathryn E Holt
    ARC Centre of Excellence in Plant Energy Biology, CMS Building M310 University of Western Australia, 35 Stirling Highway, Crawley 6009, Western Australia, Australia
    Plant Methods 2:8. 2006
    ..We consider these tools, both built on an open source software product to provide valuable, alternative tools for the prioritisation of promoter elements for experimental analysis...
  4. ncbi request reprint The plant mitochondrial proteome
    A Harvey Millar
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, University of Western Australia, Crawley 6009, W A, Australia
    Trends Plant Sci 10:36-43. 2005
    ..There are indications that some of these proteins add novel activities to mitochondrial protein complexes in plants...
  5. pmc Genomic and proteomic analysis of mitochondrial carrier proteins in Arabidopsis
    A Harvey Millar
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Western Australia, Australia
    Plant Physiol 131:443-53. 2003
    ..Overall, the combined transcript and protein expression data indicates that only a small subset of the carrier family of genes provide the majority of carrier proteins of Arabidopsis mitochondria...
  6. ncbi request reprint Changes in the mitochondrial proteome during the anoxia to air transition in rice focus around cytochrome-containing respiratory complexes
    A Harvey Millar
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Western Australia, Australia
    J Biol Chem 279:39471-8. 2004
    ..These results likely reflect limited heme synthesis for cytochrome assembly in the absence of oxygen and represent a discrete and reversible blockage of full mitochondrial biogenesis in this anoxia-tolerant species...
  7. pmc Analysis of the Arabidopsis mitochondrial proteome
    A H Millar
    Department of Biochemistry, Faculty of Medicine and Dentistry, The University of Western Australia, Crawley, Australia
    Plant Physiol 127:1711-27. 2001
    ....
  8. ncbi request reprint Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana
    Rachel Clifton
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley, Western Australia, Australia
    Plant Mol Biol 58:193-212. 2005
    ..These treatment sets emphasise the multiplicity of pathways affecting alternative electron transport components in plants...
  9. pmc Remodeled respiration in ndufs4 with low phosphorylation efficiency suppresses Arabidopsis germination and growth and alters control of metabolism at night
    Etienne H Meyer
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia
    Plant Physiol 151:603-19. 2009
    ..Our data suggest that the absence of complex I alters the adenylate control of cellular metabolism...
  10. doi request reprint Functional and composition differences between mitochondrial complex II in Arabidopsis and rice are correlated with the complex genetic history of the enzyme
    Shaobai Huang
    ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, M316, Crawley, WA, 6009, Australia
    Plant Mol Biol 72:331-42. 2010
    ....
  11. doi request reprint Differential induction of mitochondrial machinery by light intensity correlates with changes in respiratory metabolism and photorespiration in rice leaves
    Shaobai Huang
    ARC Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks CABiN, The University of Western Australia, Bayliss Building M316, 35 Stirling Highway, Crawley, WA, 6009, Australia
    New Phytol 198:103-15. 2013
    ..Insights into these light-dependent phenomena and their importance for understanding the initiation of photorespiration in rice and adaptation of mitochondria to function in photosynthetic cells are discussed...
  12. pmc Novel proteins, putative membrane transporters, and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes
    Holger Eubel
    Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, Western Australia 6009, Australia
    Plant Physiol 148:1809-29. 2008
    ....
  13. ncbi request reprint The Cytotoxic lipid peroxidation product 4-hydroxy-2-nonenal covalently modifies a selective range of proteins linked to respiratory function in plant mitochondria
    Alison M Winger
    Australian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, Crawley, Western Australia
    J Biol Chem 282:37436-47. 2007
    ....
  14. pmc Experimental analysis of the rice mitochondrial proteome, its biogenesis, and heterogeneity
    Shaobai Huang
    Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia
    Plant Physiol 149:719-34. 2009
    ....
  15. pmc Analysis of the rice mitochondrial carrier family reveals anaerobic accumulation of a basic amino acid carrier involved in arginine metabolism during seed germination
    Nicolas L Taylor
    Australian Research Council Centre of Excellence for Plant Energy Biology, University of Western Australia, Crawley, Western Australia, Australia
    Plant Physiol 154:691-704. 2010
    ....
  16. ncbi request reprint Differential impact of environmental stresses on the pea mitochondrial proteome
    Nicolas L Taylor
    The Plant Molecular Biology Group, Biochemistry and Molecular Biology, School of Biomedical and Chemical Sciences, The University of Western Australia, 35 Stirling Highway, Crawley 6009, Western Australia, Australia
    Mol Cell Proteomics 4:1122-33. 2005
    ....
  17. pmc Nucleotide and RNA metabolism prime translational initiation in the earliest events of mitochondrial biogenesis during Arabidopsis germination
    Simon R Law
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley 6009, Western Australia, Australia
    Plant Physiol 158:1610-27. 2012
    ....
  18. pmc Defining core metabolic and transcriptomic responses to oxygen availability in rice embryos and young seedlings
    Reena Narsai
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia
    Plant Physiol 151:306-22. 2009
    ..Combined with the possibility of selective transcript degradation, these transcriptional processes are involved in the core response of rice to anaerobiosis...
  19. pmc Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana
    Kristina Kuhn
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, WA, Australia
    Plant Cell 21:2762-79. 2009
    ..This implies that additional gene-specific elements direct the transcription of a subset of mitochondrial genes by RPOTmp...
  20. pmc Multiple lines of evidence localize signaling, morphology, and lipid biosynthesis machinery to the mitochondrial outer membrane of Arabidopsis
    Owen Duncan
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia
    Plant Physiol 157:1093-113. 2011
    ....
  21. pmc Lipoic acid-dependent oxidative catabolism of alpha-keto acids in mitochondria provides evidence for branched-chain amino acid catabolism in Arabidopsis
    Nicolas L Taylor
    Biochemistry and Molecular Biology, School of Biomedical and Chemical Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, Western Australia 6009, Australia
    Plant Physiol 134:838-48. 2004
    ..The potential role of branched-chain amino acid catabolism as an oxidative phosphorylation energy source or as a detoxification pathway during plant stress is discussed...
  22. pmc Differential molecular responses of rice and wheat coleoptiles to anoxia reveal novel metabolic adaptations in amino acid metabolism for tissue tolerance
    Rachel N Shingaki-Wells
    Australian Research Council Centre of Excellence for Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia
    Plant Physiol 156:1706-24. 2011
    ..The potential role of amino acid biosynthesis contributing to anoxia tolerance in cells is discussed...
  23. pmc Subcomplexes of ancestral respiratory complex I subunits rapidly turn over in vivo as productive assembly intermediates in Arabidopsis
    Lei Li
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Western Australia, Australia
    J Biol Chem 288:5707-17. 2013
    ....
  24. ncbi request reprint Oxygen initiation of respiration and mitochondrial biogenesis in rice
    Katharine A Howell
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth, Western Australia 6009, Australia
    J Biol Chem 282:15619-31. 2007
    ....
  25. ncbi request reprint A plant outer mitochondrial membrane protein with high amino acid sequence identity to a chloroplast protein import receptor
    Orinda Chew
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, 35 Stirling Highway, Nedlands, WA 6009, Australia
    FEBS Lett 557:109-14. 2004
    ..Thus Arabidopsis mitochondria contain a protein with high sequence identity to a plastid protein import receptor...
  26. pmc Mitochondrial malate dehydrogenase lowers leaf respiration and alters photorespiration and plant growth in Arabidopsis
    Tiago Tomaz
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia, Australia
    Plant Physiol 154:1143-57. 2010
    ....
  27. pmc Loss of Lon1 in Arabidopsis changes the mitochondrial proteome leading to altered metabolite profiles and growth retardation without an accumulation of oxidative damage
    Cory Solheim
    ARC Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks, University of Western Australia, Crawley, Washington 6009, Western Australia, Australia
    Plant Physiol 160:1187-203. 2012
    ....
  28. pmc A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction
    Ryan Lister
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, Western Australia 6009, Australia
    Plant Physiol 134:777-89. 2004
    ..These findings suggest that transcription of import component genes is induced when mitochondrial function is limited and that minor gene isoforms display a greater response than the predominant isoforms...
  29. doi request reprint Heterogeneity of the mitochondrial proteome for photosynthetic and non-photosynthetic Arabidopsis metabolism
    Chun Pong Lee
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, 35 Stirling Highway, Crawley 6009, Western Australia, Australia
    Mol Cell Proteomics 7:1297-316. 2008
    ....
  30. ncbi request reprint Identification of intra- and intermolecular disulphide bonding in the plant mitochondrial proteome by diagonal gel electrophoresis
    Alison M Winger
    ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, Crawley, WA, Australia
    Proteomics 7:4158-70. 2007
    ..Comparison of the protein sequences of the identified proteins with homologs from other species has identified specific Cys residues that may be responsible for plant-specific redox modulations of mitochondrial proteins...
  31. doi request reprint Type II NAD(P)H dehydrogenases are targeted to mitochondria and chloroplasts or peroxisomes in Arabidopsis thaliana
    Chris Carrie
    ARC Centre of Excellence in Plant Energy Biology, University of Western Australia, Western Australia, Australia
    FEBS Lett 582:3073-9. 2008
    ..Targeting of ND proteins to mitochondria and peroxisomes is achieved by two separate signals, a C-terminal signal for peroxisomes and an N-terminal signal for mitochondria...
  32. pmc Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process
    Katharine A Howell
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia
    Plant Physiol 149:961-80. 2009
    ....
  33. ncbi request reprint Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification
    Adam J Carroll
    Australian Research Council ARC Centre of Excellence in Plant Energy Biology and School of Biomedical, Biomolecular and Chemical Sciences, The University of Western Australia, 35 Stirling Highway, M316, Crawley 6009, Western Australia, Australia
    Mol Cell Proteomics 7:347-69. 2008
    ..These site-specific modification data provide a wealth of resources for further assessment of the role of ribosome modification in influencing translation in Arabidopsis...
  34. pmc Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana
    Reena Narsai
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley 6009, Australia
    Plant Cell 19:3418-36. 2007
    ....
  35. pmc The absence of ALTERNATIVE OXIDASE1a in Arabidopsis results in acute sensitivity to combined light and drought stress
    Estelle Giraud
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia
    Plant Physiol 147:595-610. 2008
    ....
  36. doi request reprint Components of mitochondrial oxidative phosphorylation vary in abundance following exposure to cold and chemical stresses
    Yew Foon Tan
    ARC Centre of Excellence in Plant Energy Biology, MCS building M316, The University of Western Australia, 35 Stirling Highway, Crawley WA 6009, Western Australia, Australia
    J Proteome Res 11:3860-79. 2012
    ..This includes both previously characterized stress responsive proteins as well as major components of oxidative phosphorylation, protein import/export, and metabolite transport...
  37. ncbi request reprint Nine 3-ketoacyl-CoA thiolases (KATs) and acetoacetyl-CoA thiolases (ACATs) encoded by five genes in Arabidopsis thaliana are targeted either to peroxisomes or cytosol but not to mitochondria
    Chris Carrie
    ARC Centre of Excellence in Plant Energy Biology, University of Western Australia, MCS building M316, 35 Stirling Highway, Crawley, 6009, WA, Australia
    Plant Mol Biol 63:97-108. 2007
    ..We conclude that KATs and ACATs are present in the cytosol and peroxisome, but are not found in mitochondria. The implications for fatty acid beta-oxidation and for isoleucine degradation in mitochondria are discussed...
  38. doi request reprint The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana
    Andéol Falcon de Longevialle
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley 6009 WA, Australia
    Plant J 56:157-68. 2008
    ..Loss of OTP51 has far-reaching consequences for photosystem-I and photosystem-II assembly, and for the photosynthetic fluorescence characteristics of mutant plants...
  39. ncbi request reprint A tomato alternative oxidase protein with altered regulatory properties
    Ruth C Holtzapffel
    Plant Molecular Biology Group, Biochemistry and Molecular Biology, School of Biomedical and Chemical Sciences, The University of Western Australia, 35 Stirling Highway, Crawley 6009, WA, Australia
    Biochim Biophys Acta 1606:153-62. 2003
    ..This is the first example of a dicot species expressing a natural Cys(I)/Ser isoform. The implications of the existence and expression of such Aox isoforms is discussed in the light of the hypothesised role for Aox in plant metabolism...
  40. ncbi request reprint Ordered assembly of mitochondria during rice germination begins with pro-mitochondrial structures rich in components of the protein import apparatus
    Katharine A Howell
    ARC Centre of Excellence in Plant Energy Biology, CMS Building M310, University of Western Australia, 35 Stirling Hwy, Perth, WA 6009, Australia
    Plant Mol Biol 60:201-23. 2006
    ..Together these events provide new insights into the understanding of mitochondrial maturation and the nature of pro-mitochondrial structures in plant cells...
  41. ncbi request reprint Alternative oxidases in Arabidopsis: a comparative analysis of differential expression in the gene family provides new insights into function of non-phosphorylating bypasses
    Rachel Clifton
    ARC Centre of Excellence in Plant Energy Biology, Molecular and Chemical Sciences Building, M310, University of Western Australia, Crawley, Australia
    Biochim Biophys Acta 1757:730-41. 2006
    ..An overall role for Aox in re-programming cellular metabolism in response to the ever changing environment encountered by plants is proposed...
  42. pmc Molecular distinction between alternative oxidase from monocots and dicots
    Michael James Considine
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, Western Australia 6009, Australia
    Plant Physiol 129:949-53. 2002
  43. doi request reprint Early events in plastid protein degradation in stay-green Arabidopsis reveal differential regulation beyond the retention of LHCII and chlorophyll
    Julia Grassl
    ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, 35 Stirling Highway, Crawley WA 6009, Western Australia, Australia
    J Proteome Res 11:5443-52. 2012
    ....
  44. pmc Towards an analysis of the rice mitochondrial proteome
    Joshua L Heazlewood
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Australia
    Plant Physiol 132:230-42. 2003
    ..This dataset provides the first extensive picture, to our knowledge, of mitochondrial functions in a model monocot plant...
  45. doi request reprint Organization and regulation of mitochondrial respiration in plants
    A Harvey Millar
    Australian Research Council Center of Excellence in Plant Energy Biology, University of Western Australia, M316 Crawley, Western Australia 6009, Australia
    Annu Rev Plant Biol 62:79-104. 2011
    ..We highlight the challenges for future research considering spatial and temporal changes of respiration in response to changing climatic conditions...
  46. pmc Diurnal changes in mitochondrial function reveal daily optimization of light and dark respiratory metabolism in Arabidopsis
    Chun Pong Lee
    Australian Research Council Centre of Excellence in Plant Energy Biology, Molecular and Chemical Sciences Building M310 University of Western Australia, 35 Stirling Highway, Crawley, Western Australia 6009, Australia
    Mol Cell Proteomics 9:2125-39. 2010
    ..These data quantify the nature and nuances of a daily rhythm in Arabidopsis mitochondrial respiratory capacity...
  47. pmc Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function
    Yew Foon Tan
    Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, Western Australia 6009, Australia
    Plant Physiol 152:747-61. 2010
    ....
  48. doi request reprint A survey of the Arabidopsis thaliana mitochondrial phosphoproteome
    Jun Ito
    Australian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, Crawley, Western Australia, Australia
    Proteomics 9:4229-40. 2009
    ..Information gained from this study provides a better understanding of protein phosphorylation at both the subcellular and the cellular level in Arabidopsis...
  49. ncbi request reprint Respiratory gene expression in soybean cotyledons during post-germinative development
    Daniel O Daley
    Plant Molecular Biology Group, Biochemistry and Molecular Biology, School of Biomedical and Chemical Sciences, University of Western Australia, 35 Stirling Highway, Crawley 6009, WA, Australia
    Plant Mol Biol 51:745-55. 2003
    ....
  50. pmc Accumulation of newly synthesized F1 in vivo in arabidopsis mitochondria provides evidence for modular assembly of the plant F1Fo ATP synthase
    Lei Li
    ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, Crawley WA 6009, Western Australia, Australia
    J Biol Chem 287:25749-57. 2012
    ..The potential biological implications of in vivo accumulation of enzymatically active F(1) in mitochondria are discussed...
  51. pmc Pursuing the identification of O(2) deprivation survival mechanisms in plants related to selective mRNA translation, hormone-independent cellular elongation and preparation for the arrival of oxygen
    Rachel N Shingaki-Wells
    ARC Centre of Excellence in Plant Energy Biology, Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, Crawley, WA, Australia
    Plant Signal Behav 6:1612-5. 2011
    ..Thus, we emphasize the importance of recognizing anoxia as a multi-stage stress where responses otherwise considered counter-intuitive may have evolved as preparative defenses for when exposure to air occurs...
  52. pmc Refining the definition of plant mitochondrial presequences through analysis of sorting signals, N-terminal modifications, and cleavage motifs
    Shaobai Huang
    Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, Western Australia 6009, Australia
    Plant Physiol 150:1272-85. 2009
    ..Our data also suggest a novel cleavage motif of (F/Y) downward arrow(S/A) in plant class III sequences...
  53. pmc Insights into female sperm storage from the spermathecal fluid proteome of the honeybee Apis mellifera
    Boris Baer
    ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, Stirling Hwy, Crawley, WA 6009, Australia
    Genome Biol 10:R67. 2009
    ..Because female contributions are likely to be of central importance for sperm survival, molecular insights into the process offer opportunities to observe mechanisms through which females manipulate sperm...
  54. doi request reprint Combining proteomics of root and shoot mitochondria and transcript analysis to define constitutive and variable components in plant mitochondria
    Chun Pong Lee
    ARC Centre of Excellence in Plant Energy Biology, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
    Phytochemistry 72:1092-108. 2011
    ....
  55. pmc TCP transcription factors link the regulation of genes encoding mitochondrial proteins with the circadian clock in Arabidopsis thaliana
    Estelle Giraud
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia
    Plant Cell 22:3921-34. 2010
    ....
  56. doi request reprint The seminal fluid proteome of the honeybee Apis mellifera
    Boris Baer
    ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, Crawley, WA, Australia
    Proteomics 9:2085-97. 2009
    ..The honeybee seminal fluid proteome thus represents an important addition to available data for comparative studies of seminal fluid proteomes in insects...
  57. doi request reprint Wheat mitochondrial proteomes provide new links between antioxidant defense and plant salinity tolerance
    Richard P Jacoby
    ARC Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
    J Proteome Res 9:6595-604. 2010
    ..Together, the data presented here suggest that differences in mitochondrial ROS defense pathways in the mitochondrial proteomes of key Australian wheat varieties correlate with whole-plant salinity tolerance...
  58. ncbi request reprint The C-terminal region of TIM17 links the outer and inner mitochondrial membranes in Arabidopsis and is essential for protein import
    Monika W Murcha
    Plant Molecular Biology Group, School of Biomedical and Chemicals Sciences, University of Western Australia, 35 Stirling Highway, Crawley 6009, Western Australia, Australia
    J Biol Chem 280:16476-83. 2005
    ..Together these results indicate that the C-terminal region of AtTIM17-2 is exposed on the outer surface of the outer membrane, and the C-terminal region is essential for protein import into mitochondria...
  59. pmc Sensitivity of plant mitochondrial terminal oxidases to the lipid peroxidation product 4-hydroxy-2-nonenal (HNE)
    Alison M Winger
    Biochemistry and Molecular Biology, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, WA, Australia
    Biochem J 387:865-70. 2005
    ..The implications of these results for the response of plants to reactive oxygen species are discussed...
  60. ncbi request reprint Proteomic analysis of glutathione S -transferases of Arabidopsis thaliana reveals differential salicylic acid-induced expression of the plant-specific phi and tau classes
    Pia G Sappl
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley, WA, 6009, Australia
    Plant Mol Biol 54:205-19. 2004
    ....
  61. pmc SUBA: the Arabidopsis Subcellular Database
    Joshua L Heazlewood
    ARC Centre of Excellence in Plant Energy Biology, School of Biomedical, Biomolecular and Chemical Sciences, The University of Western Australia 35 Stirling Highway, Crawley 6009, Western Australia, Australia
    Nucleic Acids Res 35:D213-8. 2007
    ..The SUBA database provides a powerful means by which to assess protein subcellular localisation in Arabidopsis (http://www.suba.bcs.uwa.edu.au)...
  62. ncbi request reprint Environmental stresses inhibit and stimulate different protein import pathways in plant mitochondria
    Nicolas L Taylor
    Plant Molecular Biology Group, Biochemistry and Molecular Biology, School of Biomedical and Chemical Sciences, The University of Western Australia, 35 Stirling Highway, 6009, Crawley, WA, Australia
    FEBS Lett 547:125-30. 2003
    ..Thus environmental stresses differentially affect import of precursor proteins in a complicated manner dependent on the import pathway utilised...
  63. pmc Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins
    Joshua L Heazlewood
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, University of Western Australia, Crawley 6009, Western Australia, Australia
    Plant Cell 16:241-56. 2004
    ..These show a clear set of putative cross-species orthologs in the core metabolic functions of mitochondria, whereas considerable diversity exists in many signaling and regulatory functions...
  64. ncbi request reprint The N-terminal cleavable extension of plant carrier proteins is responsible for efficient insertion into the inner mitochondrial membrane
    Monika W Murcha
    ARC Centre of Excellence in Plant Energy Biology, CMS Building M310, The University of Western Australia, Crawley 6009, WA, Australia
    J Mol Biol 351:16-25. 2005
    ....
  65. ncbi request reprint Analysis of the soluble ATP-binding proteome of plant mitochondria identifies new proteins and nucleotide triphosphate interactions within the matrix
    Jun Ito
    ARC Centre of Excellence in Plant Energy Biology and School of Biomedical, Biomolecular and Chemical Sciences, The University of Western Australia, 35 Stirling Highway, M316, Crawley 6009, WA, Australia
    J Proteome Res 5:3459-69. 2006
    ....
  66. ncbi request reprint Isolation and subfractionation of plant mitochondria for proteomic analysis
    Holger Eubel
    ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, Perth, Australia
    Methods Mol Biol 355:49-62. 2007
    ....
  67. ncbi request reprint Untangling multi-gene families in plants by integrating proteomics into functional genomics
    Pia G Sappl
    School of Biomedical and Chemical Sciences, The University of Western Australia, M310, Biochemistry, 35 Stirling Highway, Crawley, Perth 6009, WA, Australia
    Phytochemistry 65:1517-30. 2004
    ..In combination, these resources can explore partitioning of function between members and assess the level of redundancy within gene families...
  68. ncbi request reprint Arabidopsis mitochondrial proteomics
    Joshua L Heazlewood
    ARC Centre of Excellence in Plant Energy Biology, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley
    Methods Mol Biol 372:559-71. 2007
    ....
  69. ncbi request reprint Targets of stress-induced oxidative damage in plant mitochondria and their impact on cell carbon/nitrogen metabolism
    Nicolas L Taylor
    Biochemistry and Molecular Biology, School of Biomedical and Chemical Sciences, Faculty of Life and Physical Sciences, The University of Western Australia, 35, Stirling Highway, Crawley, WA 6009, Australia
    J Exp Bot 55:1-10. 2004
    ..Substantial evidence that both TCA cycle and photorespiratory capacity of mitochondria are sensitive sites for damage is highlighted and the implications for mitochondrial-dependent carbon and nitrogen metabolism are discussed...
  70. ncbi request reprint Molecular definition of the ascorbate-glutathione cycle in Arabidopsis mitochondria reveals dual targeting of antioxidant defenses in plants
    Orinda Chew
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Western Australia, Australia
    J Biol Chem 278:46869-77. 2003
    ..Together these data present a model of an integrated ascorbate-glutathione antioxidant defense common to plastids and mitochondria that is linked at the level of the genome in Arabidopsis...
  71. doi request reprint Resolving and identifying protein components of plant mitochondrial respiratory complexes using three dimensions of gel electrophoresis
    Etienne H Meyer
    ARC Center of Excellence in Plant Energy Biology, The University of Western Australia, 35 Stirling Highway, Crawley WA 6009, Australia
    J Proteome Res 7:786-94. 2008
    ..We identified many of the highly hydrophobic mitochondrion-encoded subunits (GRAVY scores between +0.6 to +1.4) and also found a number of nucleus-encoded proteins associated with complex I for the first time in plants...
  72. ncbi request reprint Free-flow electrophoresis for purification of plant mitochondria by surface charge
    Holger Eubel
    ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, 35 Stirling Highway, M316, Crawley, WA 6009, Australia
    Plant J 52:583-94. 2007
    ....
  73. pmc AMPDB: the Arabidopsis Mitochondrial Protein Database
    Joshua L Heazlewood
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, WA, Australia
    Nucleic Acids Res 33:D605-10. 2005
    ..It also incorporates basic analysis tools built into the query structure such as a BLAST facility and tools for protein sequence alignments for convenient analysis of queried results...
  74. ncbi request reprint Proteomic identification of divalent metal cation binding proteins in plant mitochondria
    V L Herald
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley, WA 6009, Australia
    FEBS Lett 537:96-100. 2003
    ..Three other proteins, of unknown function, were also found to shift in the presence of divalent cations. This approach has broad application for the identification of sub-proteomes based on the metal interaction of polypeptides...
  75. pmc Developmental physiology of cluster-root carboxylate synthesis and exudation in harsh hakea. Expression of phosphoenolpyruvate carboxylase and the alternative oxidase
    Michael W Shane
    School of Plant Biology, Faculty of Natural and Agricultural Sciences, The University of Western Australia, Crawley, Australia
    Plant Physiol 135:549-60. 2004
    ..Phosphorus accumulated by harsh hakea cluster roots was remobilized during senescence as part of their efficient P cycling strategy for growth on nutrient impoverished soils...
  76. ncbi request reprint Gene transfer from mitochondrion to nucleus: novel mechanisms for gene activation from Cox2
    Daniel O Daley
    Department of Biochemistry, University of Western Australia, Nedlands 6907, Australia
    Plant J 30:11-21. 2002
    ....
  77. ncbi request reprint Isolation and subfractionation of mitochondria from plants
    A H Millar
    ARC Centre of Excellence in Plant Energy Biology The University of Western Australia, Crawley 6009, Western Australia, Australia
    Methods Cell Biol 80:65-90. 2007
  78. pmc Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis
    Joshua L Heazlewood
    Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley
    Plant Physiol 139:598-609. 2005
    ....
  79. ncbi request reprint Environmental stress causes oxidative damage to plant mitochondria leading to inhibition of glycine decarboxylase
    Nicolas L Taylor
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, Faculty of Life and Physical Sciences, The University of Western Australia, Crawley, WA 6009, Western Australia, Australia
    J Biol Chem 277:42663-8. 2002
    ..The implication of the acute sensitivity of glycine decarboxylase complex H-protein to lipid peroxidation products is discussed in the context of photorespiration and potential repair mechanisms in plant mitochondria...
  80. ncbi request reprint Mitochondrial complex I from Arabidopsis and rice: orthologs of mammalian and fungal components coupled with plant-specific subunits
    Joshua L Heazlewood
    Plant Molecular Biology Group, Biochemistry and Molecular Biology, School of Biomedical and Chemical Sciences, Faculty of Life and Physical Sciences, The University of Western Australia, 35 Stirling Hwy, Crawley 6009, Western Australia, Australia
    Biochim Biophys Acta 1604:159-69. 2003
    ..This represents a post-genomic and large-scale analysis of complex I composition in higher plants...
  81. pmc Control of ascorbate synthesis by respiration and its implications for stress responses
    A Harvey Millar
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, University of Western Australia, Crawley 6009, Australia
    Plant Physiol 133:443-7. 2003
  82. doi request reprint Abiotic environmental stress induced changes in the Arabidopsis thaliana chloroplast, mitochondria and peroxisome proteomes
    Nicolas L Taylor
    ARC Centre of Excellence for Plant Energy Biology, The University of Western Australia, Crawley, WA, Australia
    J Proteomics 72:367-78. 2009
    ..We propose primary and secondary mechanisms in organelles by which the protein changes observed could be mediated in order to begin developing an integrated and mechanistic understanding of environmental stress response...
  83. ncbi request reprint The N-terminal extension of plant mitochondrial carrier proteins is removed by two-step processing: the first cleavage is by the mitochondrial processing peptidase
    Monika W Murcha
    Department of Biochemistry and Molecular Biology, School of Biomedical and Chemical Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, Western Australia, WA 6009, Australia
    J Mol Biol 344:443-54. 2004
    ..The second processing step is inhibited by Pefabloc, suggesting it is carried out by a serine protease. A model for the processing of the N-terminal extension of plant mitochondrial carrier proteins is presented...
  84. ncbi request reprint Mitochondrial cytochrome c oxidase and succinate dehydrogenase complexes contain plant specific subunits
    A Harvey Millar
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, University of Western Australia, Crawley, Western Australia 6009, Australia
    Plant Mol Biol 56:77-90. 2004
    ....
  85. ncbi request reprint The products of the mitochondrial orf25 and orfB genes are FO components in the plant F1FO ATP synthase
    J L Heazlewood
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, WA, Australia
    FEBS Lett 540:201-5. 2003
    ..Chimerics of orf25, orfB, subunit 9 and subunit 6 have been associated with cytoplasmic male sterility in a variety of plant species, our additional findings now place all these proteins in the same protein complex...
  86. pmc What makes a mitochondrion?
    Joshua L Heazlewood
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, University of Western Australia, 35 Stirling Highway, Crawley 6009, Western Australia, Australia
    Genome Biol 4:218. 2003
    ..Experimental analyses of the proteins found in the mitochondria of yeast, humans and Arabidopsis have confirmed some expectations but given some surprises and some insights into the evolutionary origins of mitochondrial proteins...
  87. pmc Desensitization of GSTF8 induction by a prior chemical treatment is long lasting and operates in a tissue-dependent manner
    Rhonda C Foley
    Commonwealth Scientific and Industrial Research Organization Plant Industry, Centre for Environmental and Life Sciences, Wembley, Western Australia 6913, Australia
    Plant Physiol 142:245-53. 2006
    ..Treatment with a phosphatase inhibitor prevents desensitization of GSTF8 expression and ocs element activity, suggesting that dephosphorylation of one or more proteins is required for desensitization to occur...
  88. pmc A predicted interactome for Arabidopsis
    Jane Geisler-Lee
    Department of Plant Biology, Southern Illinois University, Carbondale, Illinois 62901, USA
    Plant Physiol 145:317-29. 2007
    ....
  89. pmc The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana
    Andéol Falcon de Longevialle
    Unité Mixte de Recherche Génomique Végétale Institut National de la Recherche Agronomique, Centre National de la Recherche Scientifique, Université d Evry Val d Essone, 91057 Evry, France
    Plant Cell 19:3256-65. 2007
    ..The alternative respiratory pathway involving alternative oxidase is significantly induced in the mutant...
  90. ncbi request reprint Oxidative stress and plant mitochondria
    Nicolas L Taylor
    Department of Plant Sciences, University of Oxford, United Kingdom
    Methods Mol Biol 372:389-403. 2007
    ....
  91. pmc Enzymes of glycolysis are functionally associated with the mitochondrion in Arabidopsis cells
    Philippe Giegé
    Institut de Biologie Moleculaire des Plantes, Strasbourg 67084, France
    Plant Cell 15:2140-51. 2003
    ....
  92. ncbi request reprint Chromosomal clustering of nuclear genes encoding mitochondrial and chloroplast proteins in Arabidopsis
    Andrey Alexeyenko
    Center for Genomics and Bioinformatics, Karolinska Institutet, S 17177 Stockholm, Sweden
    Trends Genet 22:589-93. 2006
    ..We propose that the unexpected clustering results from continuous selection favoring chromosomal proximity of genes acting in the same organelle...
  93. doi request reprint Dynamic changes in the mitochondrial electron transport chain underpinning cold acclimation of leaf respiration
    Anna F Armstrong
    Department of Biology, University of York, PO Box 373, York, YO10 5YW, UK
    Plant Cell Environ 31:1156-69. 2008
    ....
  94. ncbi request reprint Maintenance of growth rate at low temperature in rice and wheat cultivars with a high degree of respiratory homeostasis is associated with a high efficiency of respiratory ATP production
    Kohei Kurimoto
    Department of Biology, Graduate School of Science, Osaka University, 1 1 Machikaneyama cho, Toyonaka, Osaka, 560 0043 Japan
    Plant Cell Physiol 45:1015-22. 2004
    ..We conclude that maintenance of growth rate in high-H plants grown at low temperature is associated with both respiratory homeostasis and a high efficiency of respiratory ATP production...
  95. pmc Highly integrated single-base resolution maps of the epigenome in Arabidopsis
    Ryan Lister
    Plant Biology Laboratory, The Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA
    Cell 133:523-36. 2008
    ..Finally, strand-specific mRNA-seq revealed altered transcript abundance of hundreds of genes, transposons, and unannotated intergenic transcripts upon modification of the DNA methylation state...
  96. ncbi request reprint Mitochondrial acyl carrier proteins in Arabidopsis thaliana are predominantly soluble matrix proteins and none can be confirmed as subunits of respiratory Complex I
    Etienne H Meyer
    ARC Center of Excellence in Plant Energy Biology, University of Western Australia, 4th Floor MCS Building M316, 35 Stirling Highway, 6009, Crawley, WA, Australia
    Plant Mol Biol 64:319-27. 2007
    ..thaliana mtACPs are predominately free soluble matrix proteins...
  97. pmc Salicylic acid is an uncoupler and inhibitor of mitochondrial electron transport
    Christel Norman
    Plant Molecular Biology Group, Biochemistry and Molecular Biology, School of Biomedical and Chemical Sciences, Faculty of Natural and Agricultural Sciences, The University of Western Australia, Crawley 6009, Western Australia, Australia
    Plant Physiol 134:492-501. 2004
    ..The possible implications of this for the interpretation of SA action in plants are discussed...
  98. doi request reprint A link between RNA metabolism and silencing affecting Arabidopsis development
    Brian D Gregory
    Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA
    Dev Cell 14:854-66. 2008
    ..Overall, our results reveal unexpected connections between RNA metabolism and silencing pathways...
  99. pmc Dual intracellular localization and targeting of aminoimidazole ribonucleotide synthetase in cowpea
    Danica Erin Goggin
    Department of Botany, The University of Western Australia, 35 Stirling Highway, Crawley, Western Australia 6009, Australia
    Plant Physiol 131:1033-41. 2003
    ....
  100. ncbi request reprint Zinc-dependent intermembrane space proteins stimulate import of carrier proteins into plant mitochondria
    Ryan Lister
    Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, WA, Australia
    Plant J 30:555-66. 2002
    ..This represents direct functional evidence for a distinct carrier import pathway in plant mitochondria, and provides a tool for determining the potential function of other IMS proteins associated with protein import...