Paul D Waters

Summary

Affiliation: Australian National University
Country: Australia

Publications

  1. ncbi request reprint Sex chromosomes of basal placental mammals
    Paul D Waters
    Evolutionary Genomics Group, Department of Botany and Zoology, University of Stellenbosch, Private Bag X1, Matieland 7602, South Africa
    Chromosoma 116:511-8. 2007
  2. ncbi request reprint Mammalian sex--Origin and evolution of the Y chromosome and SRY
    Paul D Waters
    Comparative Genomics Group, Research School of Biological Sciences, The Australian National University, GPO Box 475, ACT 2601, Canberra, Australia
    Semin Cell Dev Biol 18:389-400. 2007
  3. doi request reprint Physical map of two tammar wallaby chromosomes: a strategy for mapping in non-model mammals
    Janine E Deakin
    ARC Centre of Excellence for Kangaroo Genomics, Research School of Biological Sciences, The Australian National University, Canberra, ACT 0200, Australia
    Chromosome Res 16:1159-75. 2008
  4. pmc Does the human X contain a third evolutionary block? Origin of genes on human Xp11 and Xq28
    Margaret L Delbridge
    The ARC Centre of Excellence for Kangaroo Genomics, Research School of Biological Sciences, The Australian National University, ACT Australia
    Genome Res 19:1350-60. 2009
  5. pmc Evolutionary history of novel genes on the tammar wallaby Y chromosome: Implications for sex chromosome evolution
    Veronica J Murtagh
    Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, ACT 2601, Australia
    Genome Res 22:498-507. 2012
  6. pmc Evolution from XIST-independent to XIST-controlled X-chromosome inactivation: epigenetic modifications in distantly related mammals
    Julie Chaumeil
    Comparative Genomics Group, Evolution Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
    PLoS ONE 6:e19040. 2011
  7. pmc A cross-species comparison of escape from X inactivation in Eutheria: implications for evolution of X chromosome inactivation
    Shafagh Al Nadaf
    Evolution Ecology and Genetics, Research School of Biology, The Australian National University, ACT 2601, Canberra, Australia
    Chromosoma 121:71-8. 2012
  8. pmc Activity map of the tammar X chromosome shows that marsupial X inactivation is incomplete and escape is stochastic
    Shafagh Al Nadaf
    Research School of Biology, The Australian National University, Biology Place, Canberra 0200, Australia
    Genome Biol 11:R122. 2010
  9. doi request reprint Physical mapping of the elephant X chromosome: conservation of gene order over 105 million years
    Claudia Leticia Rodríguez Delgado
    Comparative Genomics Group, Research School of Biology, The Australian National University, GPO Box 475, ACT 2601, Canberra, Australia
    Chromosome Res 17:917-26. 2009
  10. doi request reprint Monotreme sex chromosomes--implications for the evolution of amniote sex chromosomes
    Paul D Waters
    Comparative Genomics Group, Research School of Biological Sciences, School of Biology, The Australian National University, GPO Box 475, Canberra, ACT 2601, Australia
    Reprod Fertil Dev 21:943-51. 2009

Collaborators

Detail Information

Publications23

  1. ncbi request reprint Sex chromosomes of basal placental mammals
    Paul D Waters
    Evolutionary Genomics Group, Department of Botany and Zoology, University of Stellenbosch, Private Bag X1, Matieland 7602, South Africa
    Chromosoma 116:511-8. 2007
    ....
  2. ncbi request reprint Mammalian sex--Origin and evolution of the Y chromosome and SRY
    Paul D Waters
    Comparative Genomics Group, Research School of Biological Sciences, The Australian National University, GPO Box 475, ACT 2601, Canberra, Australia
    Semin Cell Dev Biol 18:389-400. 2007
    ..In this review we will discuss the organization and evolution of the sex chromosomes across a broad range of mammals, and speculate on how the Y chromosome, and SRY, evolved...
  3. doi request reprint Physical map of two tammar wallaby chromosomes: a strategy for mapping in non-model mammals
    Janine E Deakin
    ARC Centre of Excellence for Kangaroo Genomics, Research School of Biological Sciences, The Australian National University, Canberra, ACT 0200, Australia
    Chromosome Res 16:1159-75. 2008
    ..Frequent rearrangement of the X, along with the absence of a marsupial XIST gene, suggests that inactivation of the marsupial X chromosome does not depend on a whole-chromosome repression by a control locus...
  4. pmc Does the human X contain a third evolutionary block? Origin of genes on human Xp11 and Xq28
    Margaret L Delbridge
    The ARC Centre of Excellence for Kangaroo Genomics, Research School of Biological Sciences, The Australian National University, ACT Australia
    Genome Res 19:1350-60. 2009
    ....
  5. pmc Evolutionary history of novel genes on the tammar wallaby Y chromosome: Implications for sex chromosome evolution
    Veronica J Murtagh
    Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, ACT 2601, Australia
    Genome Res 22:498-507. 2012
    ..Thus, the small marsupial Y chromosome is surprisingly rich in ancient genes that are retained in at least Australian marsupials and evolved from testis-brain expressed genes on the X...
  6. pmc Evolution from XIST-independent to XIST-controlled X-chromosome inactivation: epigenetic modifications in distantly related mammals
    Julie Chaumeil
    Comparative Genomics Group, Evolution Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
    PLoS ONE 6:e19040. 2011
    ....
  7. pmc A cross-species comparison of escape from X inactivation in Eutheria: implications for evolution of X chromosome inactivation
    Shafagh Al Nadaf
    Evolution Ecology and Genetics, Research School of Biology, The Australian National University, ACT 2601, Canberra, Australia
    Chromosoma 121:71-8. 2012
    ..In contrast, the recently added region of the eutherian X displays an incomplete inactivation profile similar to that observed on the evolutionarily distinct marsupial X and the independently evolved monotreme X chromosomes...
  8. pmc Activity map of the tammar X chromosome shows that marsupial X inactivation is incomplete and escape is stochastic
    Shafagh Al Nadaf
    Research School of Biology, The Australian National University, Biology Place, Canberra 0200, Australia
    Genome Biol 11:R122. 2010
    ..In marsupials, X inactivation is known to be paternal, incomplete and tissue-specific, and occurs in the absence of an XIST orthologue...
  9. doi request reprint Physical mapping of the elephant X chromosome: conservation of gene order over 105 million years
    Claudia Leticia Rodríguez Delgado
    Comparative Genomics Group, Research School of Biology, The Australian National University, GPO Box 475, ACT 2601, Canberra, Australia
    Chromosome Res 17:917-26. 2009
    ....
  10. doi request reprint Monotreme sex chromosomes--implications for the evolution of amniote sex chromosomes
    Paul D Waters
    Comparative Genomics Group, Research School of Biological Sciences, School of Biology, The Australian National University, GPO Box 475, Canberra, ACT 2601, Australia
    Reprod Fertil Dev 21:943-51. 2009
    ....
  11. pmc Independent evolution of transcriptional inactivation on sex chromosomes in birds and mammals
    Alexandra M Livernois
    Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
    PLoS Genet 9:e1003635. 2013
    ....
  12. doi request reprint Identification of cryptic sex chromosomes and isolation of X- and Y-borne genes
    Paul D Waters
    Research School of Biological Sciences, The Australian National University, Canberra, Australia
    Methods Mol Biol 422:239-51. 2008
    ..We describe a method to isolate, identify, and map genomic BAC clones from the Y chromosome, and we also identify strategies for isolating candidate sex chromosome genes...
  13. ncbi request reprint Autosomal location of genes from the conserved mammalian X in the platypus (Ornithorhynchus anatinus): implications for mammalian sex chromosome evolution
    Paul D Waters
    Comparative Genomics Group, Research Group of Biological Science, The Australian National University, Canberra, ACT, 2601, Australia
    Chromosome Res 13:401-10. 2005
    ..Since these genes lie on the X in marsupials and eutherians, and also on the homologous region of chicken chromosome 4, this represents a loss from the monotreme X rather than an additional evolutionary stratum of the human X...
  14. doi request reprint Core-SINE blocks comprise a large fraction of monotreme genomes; implications for vertebrate chromosome evolution
    Patrick J Kirby
    Comparative Genomics Group, Research School of Biological Science, The Australian National University, Canberra, ACT 2601, Australia
    Chromosome Res 15:975-84. 2007
    ..In the forthcoming sequence of the platypus genome there are still large gaps, and the extensive Mon core-SINE accumulation on the distal regions of the six large autosomal pairs may provide one explanation for this missing sequence...
  15. pmc Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes
    Frederic Veyrunes
    Research School of Biological Sciences, Australian National University, Canberra 2601, Australia
    Genome Res 18:965-73. 2008
    ..Therefore, the therian X and Y are more than 145 million years younger than previously thought...
  16. doi request reprint Sex determination in platypus and echidna: autosomal location of SOX3 confirms the absence of SRY from monotremes
    M C Wallis
    Comparative Genomics Group, Research School of Biological Sciences, The Australian National University, Canberra, ACT 2601, Australia
    Chromosome Res 15:949-59. 2007
    ..Sex determination in platypus and echidna must therefore depend on another male-determining gene(s) on the Y chromosomes, or on the different dosage of a gene(s) on the X chromosomes...
  17. doi request reprint Conservation of a chromosome arm in two distantly related marsupial species
    A Mohammadi
    ARC Centre of Excellence for Kangaroo Genomics, Research School of Biological Sciences, The Australian National University, Canberra, ACT, Australia
    Cytogenet Genome Res 124:147-50. 2009
    ..Thus this chromosome arm is genetically, as well as cytologically, conserved over the 55-80 million years that separate kangaroos and the opossum...
  18. doi request reprint LINE-1 elements: analysis by fluorescence in-situ hybridization and nucleotide sequences
    Paul D Waters
    Research School of Biological Sciences, The Australian National University, Canberra, Australia
    Methods Mol Biol 422:227-37. 2008
    ....
  19. ncbi request reprint Assignment of the thymosin beta 4 X/Y chromosome (TMSB4X/Y) gene to tammar wallaby chromosome 5p by fluorescence in situ hybridisation
    P D Waters
    Comparative Genomics Group, Research School of Biological Science, The Australian National University, Canberra, Australia
    Cytogenet Genome Res 103:203F. 2003
  20. ncbi request reprint Molecular characterization and evolution of X and Y-borne ATRX homologues in American marsupials
    Denise R Carvalho-Silva
    Research School of Biological Science, Australian National University, ACT 0200, Canberra, Australia
    Chromosome Res 12:795-804. 2004
    ..Thus there appears to be a Y-borne copy of ATRY in American, as well as Australian marsupials, although it has diverged in sequence, as have other Y genes that are testis-specific in both eutherian and marsupial lineages...
  21. ncbi request reprint Assignment of the protocadherin 20 (PCDH20) gene to tammar wallaby chromosome 6q by fluorescence in situ hybridisation
    P D Waters
    Comparative Genomics Group, Research Group of Biological Science, The Australian National University, Canberra 2601, Australia
    Cytogenet Genome Res 98:311D. 2002
  22. pmc Genome analysis of the platypus reveals unique signatures of evolution
    Wesley C Warren
    Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA
    Nature 453:175-83. 2008
    ..Sequencing of this genome now provides a valuable resource for deep mammalian comparative analyses, as well as for monotreme biology and conservation...
  23. ncbi request reprint LINE-1 distribution in Afrotheria and Xenarthra: implications for understanding the evolution of LINE-1 in eutherian genomes
    Paul D Waters
    Evolutionary Genomics Group, Department of Zoology, University of Stellenbosch, Private Bag X1, 7602, Matieland, South Africa
    Chromosoma 113:137-44. 2004
    ..We discuss these findings with reference to models that have previously been proposed to explain the AT distribution bias of L1 in human and mouse, and how this relates to the evolution of these elements in other eutherian genomes...