Bu Jun Shi

Summary

Affiliation: Australian Centre for Plant Functional Genomics
Country: Australia

Publications

  1. pmc A comprehensive expression profile of microRNAs and other classes of non-coding small RNAs in barley under phosphorous-deficient and -sufficient conditions
    Michael Hackenberg
    Computational Genomics and Bioinformatics Group, Genetics Department, University of Granada, Granada 18071, Spain
    DNA Res 20:109-25. 2013
  2. pmc BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.)
    Daniela Schulte
    Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr, 3, 06466 Gatersleben, Germany
    BMC Genomics 12:247. 2011
  3. pmc Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing
    Ling Ling Gao
    Plant Industry, Commonwealth Scientific and Industrial Research Organisation, Private Bag No, 5, Wembley WA 6913, Australia
    BMC Genomics 12:521. 2011
  4. pmc The cucumovirus 2b gene drives selection of inter-viral recombinants affecting the crossover site, the acceptor RNA and the rate of selection
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, University of Adelaide, School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA 5064, Australia
    Nucleic Acids Res 36:1057-71. 2008
  5. ncbi request reprint Differential virulence by strains of Cucumber mosaic virus is mediated by the 2b gene
    Bu Jun Shi
    Department of Plant Science, Waite Institute, Adelaide University, Glen Osmond, SA, Australia
    Mol Plant Microbe Interact 15:947-55. 2002
  6. ncbi request reprint The conserved, 5' termini of RNAs 1 and 2 of Tomato aspermy virus are dispensable for infection but affect virulence
    Bu Jun Shi
    Department of Plant Science, Waite Campus, University of Adelaide, Glen Osmond, 5064, SA, Australia
    Virus Genes 30:181-91. 2005
  7. ncbi request reprint The 2b protein of cucumoviruses has a role in promoting the cell-to-cell movement of pseudorecombinant viruses
    Bu Jun Shi
    Department of Plant Science, Waite Institute, Adelaide University, Glen Osmond, SA 5064, Australia
    Mol Plant Microbe Interact 16:261-7. 2003
  8. pmc Discovery of barley miRNAs through deep sequencing of short reads
    Andreas W Schreiber
    Australian Centre for Plant Functional Genomics, The University of Adelaide, South Australia 5064, Australia
    BMC Genomics 12:129. 2011
  9. pmc A transgenic transcription factor (TaDREB3) in barley affects the expression of microRNAs and other small non-coding RNAs
    Michael Hackenberg
    Department of Genetics, University of Granada, Granada, Granada, Spain
    PLoS ONE 7:e42030. 2012
  10. pmc Characterization of phosphorus-regulated miR399 and miR827 and their isomirs in barley under phosphorus-sufficient and phosphorus-deficient conditions
    Michael Hackenberg
    Australian Centre for Plant Functional Genomics, The University of Adelaide, Urrbrae, South Australia 5064, Australia
    BMC Plant Biol 13:214. 2013

Collaborators

Detail Information

Publications17

  1. pmc A comprehensive expression profile of microRNAs and other classes of non-coding small RNAs in barley under phosphorous-deficient and -sufficient conditions
    Michael Hackenberg
    Computational Genomics and Bioinformatics Group, Genetics Department, University of Granada, Granada 18071, Spain
    DNA Res 20:109-25. 2013
    ..Our data provide valuable clues for understanding the properties of sRNAs and new insights into the potential roles of miRNAs and other classes of sRNAs in the control of phosphate homeostasis...
  2. pmc BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.)
    Daniela Schulte
    Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr, 3, 06466 Gatersleben, Germany
    BMC Genomics 12:247. 2011
    ..To start such an endeavor, large insert genomic libraries, i.e. Bacterial Artificial Chromosome (BAC) libraries, which are unbiased and representing deep haploid genome coverage, need to be ready in place...
  3. pmc Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing
    Ling Ling Gao
    Plant Industry, Commonwealth Scientific and Industrial Research Organisation, Private Bag No, 5, Wembley WA 6913, Australia
    BMC Genomics 12:521. 2011
    ..Recent interest is being directed at NLL to improve grain production, disease and pest management and health benefits of the grain. However, studies have been hindered by a lack of extensive genomic resources for the species...
  4. pmc The cucumovirus 2b gene drives selection of inter-viral recombinants affecting the crossover site, the acceptor RNA and the rate of selection
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, University of Adelaide, School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA 5064, Australia
    Nucleic Acids Res 36:1057-71. 2008
    ..The recombination occurred in a non-random manner, involved no intermediates and probably was generated via a copy-choice mechanism during (+) strand RNA synthesis...
  5. ncbi request reprint Differential virulence by strains of Cucumber mosaic virus is mediated by the 2b gene
    Bu Jun Shi
    Department of Plant Science, Waite Institute, Adelaide University, Glen Osmond, SA, Australia
    Mol Plant Microbe Interact 15:947-55. 2002
    ....
  6. ncbi request reprint The conserved, 5' termini of RNAs 1 and 2 of Tomato aspermy virus are dispensable for infection but affect virulence
    Bu Jun Shi
    Department of Plant Science, Waite Campus, University of Adelaide, Glen Osmond, 5064, SA, Australia
    Virus Genes 30:181-91. 2005
    ..None of the constructed mutants were able to compete for accumulation with the wildtype virus after co-inoculation to the plant species tested...
  7. ncbi request reprint The 2b protein of cucumoviruses has a role in promoting the cell-to-cell movement of pseudorecombinant viruses
    Bu Jun Shi
    Department of Plant Science, Waite Institute, Adelaide University, Glen Osmond, SA 5064, Australia
    Mol Plant Microbe Interact 16:261-7. 2003
    ..These data also suggest the existence of specific interaction between the TAV 2b protein and either RNA 3 or its encoded proteins, which may be critical for promoting or maintaining infection or both...
  8. pmc Discovery of barley miRNAs through deep sequencing of short reads
    Andreas W Schreiber
    Australian Centre for Plant Functional Genomics, The University of Adelaide, South Australia 5064, Australia
    BMC Genomics 12:129. 2011
    ..However, miRNAs from barley, one of the most important cereal crops, remain unknown...
  9. pmc A transgenic transcription factor (TaDREB3) in barley affects the expression of microRNAs and other small non-coding RNAs
    Michael Hackenberg
    Department of Genetics, University of Granada, Granada, Granada, Spain
    PLoS ONE 7:e42030. 2012
    ..All the predicted novel miRNA targets were validated using a degradome library. Our data provide an insight into the effect of TF on the expression of sRNAs in barley...
  10. pmc Characterization of phosphorus-regulated miR399 and miR827 and their isomirs in barley under phosphorus-sufficient and phosphorus-deficient conditions
    Michael Hackenberg
    Australian Centre for Plant Functional Genomics, The University of Adelaide, Urrbrae, South Australia 5064, Australia
    BMC Plant Biol 13:214. 2013
    ..However, the response of miR399 and miR827 to P conditions in barley has not been investigated...
  11. doi request reprint The N-terminal 12 amino acids of tomato aspermy virus 2b protein function in infection and recombination
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, and School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA 5064, Australia
    J Gen Virol 92:2706-10. 2011
    ..These data suggest that oligopeptides can have important functions in the biology of viruses and prompt a re-examination of existing small ORFs in sequenced virus genomes...
  12. ncbi request reprint Stable and unstable mutations in the 5' non-translated regions of tomato aspermy virus RNAs 1 and 2 generated de novo from infectious cDNA clones containing a cauliflower mosaic virus 35S promoter
    Bu Jun Shi
    Department of Plant Science, Waite Institute, Adelaide University, Glen Osmond, SA 5064, Australia
    Virus Genes 28:277-83. 2004
    ..The alternations observed had no impact on symptoms or infectivity, but did affect the accumulation of specific viral RNAs. The data also demonstrated the existence of some plasticity in the sequence of the 5' NTR...
  13. ncbi request reprint Stability and competitiveness of interviral recombinant RNAs derived from a chimeric cucumovirus
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, University of Adelaide, Glen Osmond, SA 5064, Australia
    Virus Res 140:216-21. 2009
    ..Our data provide additional mechanistic insight into generation, stabilization and competition of recombinant viral RNA in infected host plants...
  14. ncbi request reprint Extensive variation of sequence within isolates of Grapevine virus B+
    Bu Jun Shi
    Waite Diagnostics, School of Agriculture and Wine, Waite Campus, University of Adelaide, Glen Osmond, SA 5064, Australia
    Virus Genes 29:279-85. 2004
    ..Although it has been reported that GVB is associated with corky bark disease, no corky bark symptoms were observed in any of the GVB positive grapevine sample collected from Australia...
  15. doi request reprint A simple TAE-based method to generate large insert BAC libraries from plant species
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, University of Adelaide, Glen Osmond, SA 5064, Australia
    Methods Mol Biol 513:57-80. 2009
    ..We have used this method to produce BAC libraries from different plant species including sunolgrass (Phalaris coerulescens L.), barley (Hordeum vulgare L.), lupin (Lupinus angustifolias L.) and rye (Secale cereale L.)...
  16. doi request reprint Comparative study of genes expressed from rice fungus-resistant and susceptible lines during interactions with Magnaporthe oryzae
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, The University of Adelaide, Urrbrae, SA 5064, Australia
    Gene 427:80-5. 2008
    ..This study illustrates that sequencing of ESTs from inoculated resistant plants can reveal genes responsive to pathogen infection, which could help understand plant defense mechanisms...
  17. ncbi request reprint Boron-toxicity tolerance in barley arising from efflux transporter amplification
    Tim Sutton
    Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Private Mail Bag 1, Glen Osmond, South Australia 5064, Australia
    Science 318:1446-9. 2007
    ..Bot1 transcript levels identified in barley tissues are consistent with a role in limiting the net entry of boron into the root and in the disposal of boron from leaves via hydathode guttation...