Bu Jun Shi

Summary

Affiliation: Australian Centre for Plant Functional Genomics
Country: Australia

Publications

  1. ncbi BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.)
    Daniela Schulte
    Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr, 3, 06466 Gatersleben, Germany
    BMC Genomics 12:247. 2011
  2. ncbi Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing
    Ling Ling Gao
    Plant Industry, Commonwealth Scientific and Industrial Research Organisation, Private Bag No, 5, Wembley WA 6913, Australia
    BMC Genomics 12:521. 2011
  3. ncbi The cucumovirus 2b gene drives selection of inter-viral recombinants affecting the crossover site, the acceptor RNA and the rate of selection
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, University of Adelaide, School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA 5064, Australia
    Nucleic Acids Res 36:1057-71. 2008
  4. ncbi The N-terminal 12 amino acids of tomato aspermy virus 2b protein function in infection and recombination
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, and School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA 5064, Australia
    J Gen Virol 92:2706-10. 2011
  5. ncbi Discovery of barley miRNAs through deep sequencing of short reads
    Andreas W Schreiber
    Australian Centre for Plant Functional Genomics, The University of Adelaide, South Australia 5064, Australia
    BMC Genomics 12:129. 2011
  6. ncbi Stability and competitiveness of interviral recombinant RNAs derived from a chimeric cucumovirus
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, University of Adelaide, Glen Osmond, SA 5064, Australia
    Virus Res 140:216-21. 2009
  7. ncbi Comparative study of genes expressed from rice fungus-resistant and susceptible lines during interactions with Magnaporthe oryzae
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, The University of Adelaide, Urrbrae, SA 5064, Australia
    Gene 427:80-5. 2008
  8. ncbi Boron-toxicity tolerance in barley arising from efflux transporter amplification
    Tim Sutton
    Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Private Mail Bag 1, Glen Osmond, South Australia 5064, Australia
    Science 318:1446-9. 2007
  9. ncbi A simple TAE-based method to generate large insert BAC libraries from plant species
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, University of Adelaide, Glen Osmond, SA 5064, Australia
    Methods Mol Biol 513:57-80. 2009
  10. ncbi The conserved, 5' termini of RNAs 1 and 2 of Tomato aspermy virus are dispensable for infection but affect virulence
    Bu-Jun Shi
    Department of Plant Science, Waite Campus, University of Adelaide, Glen Osmond, 5064, SA, Australia
    Virus Genes 30:181-91. 2005

Collaborators

Detail Information

Publications13

  1. ncbi BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.)
    Daniela Schulte
    Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr, 3, 06466 Gatersleben, Germany
    BMC Genomics 12:247. 2011
    ..To start such an endeavor, large insert genomic libraries, i.e. Bacterial Artificial Chromosome (BAC) libraries, which are unbiased and representing deep haploid genome coverage, need to be ready in place...
  2. ncbi Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing
    Ling Ling Gao
    Plant Industry, Commonwealth Scientific and Industrial Research Organisation, Private Bag No, 5, Wembley WA 6913, Australia
    BMC Genomics 12:521. 2011
    ..Recent interest is being directed at NLL to improve grain production, disease and pest management and health benefits of the grain. However, studies have been hindered by a lack of extensive genomic resources for the species...
  3. ncbi The cucumovirus 2b gene drives selection of inter-viral recombinants affecting the crossover site, the acceptor RNA and the rate of selection
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, University of Adelaide, School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA 5064, Australia
    Nucleic Acids Res 36:1057-71. 2008
    ..The recombination occurred in a non-random manner, involved no intermediates and probably was generated via a copy-choice mechanism during (+) strand RNA synthesis...
  4. ncbi The N-terminal 12 amino acids of tomato aspermy virus 2b protein function in infection and recombination
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, and School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA 5064, Australia
    J Gen Virol 92:2706-10. 2011
    ..These data suggest that oligopeptides can have important functions in the biology of viruses and prompt a re-examination of existing small ORFs in sequenced virus genomes...
  5. ncbi Discovery of barley miRNAs through deep sequencing of short reads
    Andreas W Schreiber
    Australian Centre for Plant Functional Genomics, The University of Adelaide, South Australia 5064, Australia
    BMC Genomics 12:129. 2011
    ..However, miRNAs from barley, one of the most important cereal crops, remain unknown...
  6. ncbi Stability and competitiveness of interviral recombinant RNAs derived from a chimeric cucumovirus
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, University of Adelaide, Glen Osmond, SA 5064, Australia
    Virus Res 140:216-21. 2009
    ..Our data provide additional mechanistic insight into generation, stabilization and competition of recombinant viral RNA in infected host plants...
  7. ncbi Comparative study of genes expressed from rice fungus-resistant and susceptible lines during interactions with Magnaporthe oryzae
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, The University of Adelaide, Urrbrae, SA 5064, Australia
    Gene 427:80-5. 2008
    ..This study illustrates that sequencing of ESTs from inoculated resistant plants can reveal genes responsive to pathogen infection, which could help understand plant defense mechanisms...
  8. ncbi Boron-toxicity tolerance in barley arising from efflux transporter amplification
    Tim Sutton
    Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Private Mail Bag 1, Glen Osmond, South Australia 5064, Australia
    Science 318:1446-9. 2007
    ..Bot1 transcript levels identified in barley tissues are consistent with a role in limiting the net entry of boron into the root and in the disposal of boron from leaves via hydathode guttation...
  9. ncbi A simple TAE-based method to generate large insert BAC libraries from plant species
    Bu Jun Shi
    Australian Centre for Plant Functional Genomics, University of Adelaide, Glen Osmond, SA 5064, Australia
    Methods Mol Biol 513:57-80. 2009
    ..We have used this method to produce BAC libraries from different plant species including sunolgrass (Phalaris coerulescens L.), barley (Hordeum vulgare L.), lupin (Lupinus angustifolias L.) and rye (Secale cereale L.)...
  10. ncbi The conserved, 5' termini of RNAs 1 and 2 of Tomato aspermy virus are dispensable for infection but affect virulence
    Bu-Jun Shi
    Department of Plant Science, Waite Campus, University of Adelaide, Glen Osmond, 5064, SA, Australia
    Virus Genes 30:181-91. 2005
    ..None of the constructed mutants were able to compete for accumulation with the wildtype virus after co-inoculation to the plant species tested...
  11. ncbi The 2b protein of cucumoviruses has a role in promoting the cell-to-cell movement of pseudorecombinant viruses
    Bu-Jun Shi
    Department of Plant Science, Waite Institute, Adelaide University, Glen Osmond, SA 5064, Australia
    Mol Plant Microbe Interact 16:261-7. 2003
    ..These data also suggest the existence of specific interaction between the TAV 2b protein and either RNA 3 or its encoded proteins, which may be critical for promoting or maintaining infection or both...
  12. ncbi Differential virulence by strains of Cucumber mosaic virus is mediated by the 2b gene
    Bu-Jun Shi
    Department of Plant Science, Waite Institute, Adelaide University, Glen Osmond, SA, Australia
    Mol Plant Microbe Interact 15:947-55. 2002
    ....
  13. ncbi Stable and unstable mutations in the 5' non-translated regions of tomato aspermy virus RNAs 1 and 2 generated de novo from infectious cDNA clones containing a cauliflower mosaic virus 35S promoter
    Bu-Jun Shi
    Department of Plant Science, Waite Institute, Adelaide University, Glen Osmond, SA 5064, Australia
    Virus Genes 28:277-83. 2004
    ..The alternations observed had no impact on symptoms or infectivity, but did affect the accumulation of specific viral RNAs. The data also demonstrated the existence of some plasticity in the sequence of the 5' NTR...