Maria Anisimova

Summary

Publications

  1. ncbi Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
    Maria Anisimova
    Equipe Méthodes et Algorithmes pour la Bioinformatique LIRMM CNRS, Universite Montpellier II, Montpellier 34392, France
    Syst Biol 55:539-52. 2006
  2. ncbi Phylogenomic analysis of natural selection pressure in Streptococcus genomes
    Maria Anisimova
    Department of Biology, University College London, London, UK
    BMC Evol Biol 7:154. 2007
  3. ncbi Molecular evolution of the hepatitis delta virus antigen gene: recombination or positive selection?
    Maria Anisimova
    Department of Biology, University College London, London WC1E 6BT, UK
    J Mol Evol 59:815-26. 2004
  4. ncbi Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites
    Maria Anisimova
    Department of Biology, University College London, London, UK
    Mol Biol Evol 24:1219-28. 2007
  5. ncbi Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites
    Maria Anisimova
    Department of Biology, University College London, London WC1E 6BT, United Kingdom
    Genetics 164:1229-36. 2003
  6. ncbi Positive and negative selection in the beta-esterase gene cluster of the Drosophila melanogaster subgroup
    Evgeniy S Balakirev
    Department of Ecology and Evolutionary Biology, University of California, 321 Steinhaus Hall, Irvine, CA 92697 2525, USA
    J Mol Evol 62:496-510. 2006
  7. ncbi Origin and evolution of GALA-LRR, a new member of the CC-LRR subfamily: from plants to bacteria?
    Andrey V Kajava
    Centre de Recherches de Biochimie Macromoleculaire, CNRS, University of Montpellier 1 and 2, Montpellier, France
    PLoS ONE 3:e1694. 2008

Detail Information

Publications7

  1. ncbi Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
    Maria Anisimova
    Equipe Méthodes et Algorithmes pour la Bioinformatique LIRMM CNRS, Universite Montpellier II, Montpellier 34392, France
    Syst Biol 55:539-52. 2006
    ..The aLRT is implemented within the algorithm used by the recent fast maximum likelihood tree estimation program PHYML (Guindon and Gascuel, 2003)...
  2. ncbi Phylogenomic analysis of natural selection pressure in Streptococcus genomes
    Maria Anisimova
    Department of Biology, University College London, London, UK
    BMC Evol Biol 7:154. 2007
    ..The genus Streptococcus is comprised of a wide variety of both pathogenic and commensal lineages, and we relate our findings to the pre-existing knowledge of Streptococcus virulence factors...
  3. ncbi Molecular evolution of the hepatitis delta virus antigen gene: recombination or positive selection?
    Maria Anisimova
    Department of Biology, University College London, London WC1E 6BT, UK
    J Mol Evol 59:815-26. 2004
    ..Possible interplay between positive selection and recombination on the gene is discussed but no significant evidence for recombination was found...
  4. ncbi Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites
    Maria Anisimova
    Department of Biology, University College London, London, UK
    Mol Biol Evol 24:1219-28. 2007
    ..Both our simulation and real data analysis suggest that the multiple test procedures are useful when multiple branches have to be tested on the same data set...
  5. ncbi Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites
    Maria Anisimova
    Department of Biology, University College London, London WC1E 6BT, United Kingdom
    Genetics 164:1229-36. 2003
    ..Identification of sites under positive selection by the empirical Bayes method appears to be less affected than the LRT by recombination...
  6. ncbi Positive and negative selection in the beta-esterase gene cluster of the Drosophila melanogaster subgroup
    Evgeniy S Balakirev
    Department of Ecology and Evolutionary Biology, University of California, 321 Steinhaus Hall, Irvine, CA 92697 2525, USA
    J Mol Evol 62:496-510. 2006
    ....
  7. ncbi Origin and evolution of GALA-LRR, a new member of the CC-LRR subfamily: from plants to bacteria?
    Andrey V Kajava
    Centre de Recherches de Biochimie Macromoleculaire, CNRS, University of Montpellier 1 and 2, Montpellier, France
    PLoS ONE 3:e1694. 2008
    ..This conclusion provides a strong background for further functional studies aimed at determining the role of these type III effectors in the virulence of R. solanacearum...